Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1031 ATGGCCACTTCACAGCAAGATTCCTCACGTGCTTCACGCATGTACTGCTACACCTCAGACGAAGATCACGACGACCTCGAAGACAATAGTGACGTTAATGACAGCGAGGACATCGAGGAAGAAGAATTAGAAGAAAACGACGACGACAAGGTCGTCGGGTGCTGGCCAAACGGCGTCACACTCAACAGCGGTGTACGGTGTGGGTCTCGACGGGCGGGTTGGTCGCTGGGCGAGGTGTTTGACCCGAGAGCGAAATGGGTTCAAGAATGGAACAGGGTGTTCCTGCTGGTGTGTGCAGTCGGGTTGTTCGTGGACCCGCTCTTCTTCTACGCGCTCTCCGTAAGCGACACGTGCATGTGCCTCTTCGTTGATGGGTGGTTCGCCCTCACCGTGACGGCGCTCCGGTGCATGACGGACGCGGTGCACATGTGGAACATGTGGCTTCAGCTTAAGATGGCCAAACGGAGCTTCGGCCTCGGTGCTGGAAGTGGGCTCATGGACACCAACTCTCGCTCAGCTGCTCGTCGCTATCTCAAGGCCAAGAAGGGCTTCTTATTTGACCTCTTCGTTATTCTTCCTCTTCCCCAGATTGTAGTATGGGTGACAATCCCCTATCTGTTGGAGAAAGAGCTAGTAATATTGGTGATGACAGTGTTCTTAATAATGTTCTTGTTCCAATACCTTCCCAAAATATACCATTCTGTTTGCCTCTTGCGTCGCATGCAAAACCTTTCTGGTTACATTTTTGGAACCGTTTGGTGGGGTATCGCCCTTAACATGATCGCTTACTTTGTCGCCTCTCATGCAGCAGGGGCATGTTGGTACCTGCTAGGGATACAAAGGGCAGCCAAGTGCCTGAAAGAGCAATGCGGGAAAACAATTGGATGTGGCCTTGGGATGCTGTCTTGTAAACAACCTGTATACTATGGAACCGTTAGTATGGTGAGGGACAGAGCAAGGTTGGCATGGGCAGAGAATAGGCAAGCAAGGTCTACTTGCTTAGATAGCTCTGAGAATTACGGCTATGGAGCTTATAAATGGACTGTTCAACTTGTCACTAATGATAGTCGAATGGAAAAGATACTCTTCCCTATTTTCTGGGGCCTAATGACTCTCAGCACTTTTGGGAACCTTGAGAGCACGACGGAATGGCTAGAAGTTGTTTTCAACATTGTTGCTTTGACCAGTGGCCTTCTTCTAGTCACTATGTTGATTGGAAACATCAAGGTGTTTTTACATGCAACAACATCAAAGAAGCAAGCAATGCAACTGAAGATGAGGAACATAGAATGGTGGATGAGGAAAAGGCGGTTGCCTCAAGGTTTCCGGCAGCGAGTGCCACTTTTTCAGCATATGGATGATCTGGTCCTAGAGAACATTTGCGACCGTGTGAAGTCCCTCATATTCACAAAGGGAGAGATTATAACCAGAGAGGGAGACCCAGTACAAAGAATGCTCTTCGTAGTAAGAGGGCACCTTCAAAGCAGCCAAGTTCTAAGAGACGGTGTGAAAAGTTGCTGCATGTTAGGCCCAGGAAACTTCAGCGGTGACGAGCTCCTTTCATGGTGTTTAAGAAGACCCTTCATAGAACGTCTTCCACCATCTTCATCGACCCTAATCACATTGGAAACCACAGAGGCATTTGGGCTCGAAGCAGAGGACGTGAAGTACGTGACTCAGCATTTTAGGTACACATTTGTGAAGGAGAAGGTCAAAAGAAGCGCCAGGTATTACTCCCCTGGGTGGAGAACTTGGGCTGCTGTGGCCATTCAGTTGGCTTGGAGAAGGTATAAGCATCGCTTGACTTTGACGTCGTTGTCGTTCATACGGCCTCGGAGGCCTTTATCGCGAAGCTCCTCCATGGGGGAGGATAAGATTCGGCTTTATACTGCTTTGTTAACTTCTCCAAAGCCTAATCAGGATGATTTTGATTTTTGA 1938 0.4881 MATSQQDSSRASRMYCYTSDEDHDDLEDNSDVNDSEDIEEEELEENDDDKVVGCWPNGVTLNSGVRCGSRRAGWSLGEVFDPRAKWVQEWNRVFLLVCAVGLFVDPLFFYALSVSDTCMCLFVDGWFALTVTALRCMTDAVHMWNMWLQLKMAKRSFGLGAGSGLMDTNSRSAARRYLKAKKGFLFDLFVILPLPQIVVWVTIPYLLEKELVILVMTVFLIMFLFQYLPKIYHSVCLLRRMQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCGKTIGCGLGMLSCKQPVYYGTVSMVRDRARLAWAENRQARSTCLDSSENYGYGAYKWTVQLVTNDSRMEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIVALTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVPLFQHMDDLVLENICDRVKSLIFTKGEIITREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDKIRLYTALLTSPKPNQDDFDF 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1031 645 FunFam cyclic nucleotide-gated ion channel 4 446 564 - -
Glsi04g1031 645 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 71 446 - -
Glsi04g1031 645 Pfam Cyclic nucleotide-binding domain 469 556 IPR000595 -
Glsi04g1031 645 SUPERFAMILY cAMP-binding domain-like 444 562 IPR018490 -
Glsi04g1031 645 Gene3D Jelly Rolls 446 564 IPR014710 -
Glsi04g1031 645 Pfam Ion transport protein 90 408 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Glsi04g1031 645 ProSiteProfiles cAMP/cGMP binding motif profile. 448 558 IPR000595 -
Glsi04g1031 645 MobiDBLite consensus disorder prediction 21 48 - -
Glsi04g1031 645 CDD CAP_ED 448 554 IPR000595 -
Glsi04g1031 645 MobiDBLite consensus disorder prediction 19 48 - -
Glsi04g1031 645 SUPERFAMILY Voltage-gated potassium channels 82 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1031 Glsi-ChrGlsi04 8873173 8881953 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1031 64 644 Ion Channels AT5G54250 73.511 0.0 934