Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g1004 ATGGCGGCTGGGGGCCATGCTCACGTAATCTGGATGCCAGATAAGGTGCATACTGTAGCACGGTCTCCGGTAGCGTCAGACAAGGGAAAGTCTCCTTCTTCTGCTGAAAAGATTGGAGTGAAGAAAGGTCCATGGACACCAGAGGAAGATCAGAAGCTCTTCGATTTTATTCAGAAATATGGACATGGGAAATGGAGAGCCCTTCCCAAGAATGCAGCAAGGGTAAGGTGGTCTACAATTGCTGCTAGCTTGCCAGGAAGAACAGATAATGAGATCAAGAATTATTGGAATACCCATATCAAGAAGAAGCTATTGAAGATGGGAATAGATCCTGTCACTCACACCCCATGCCTTGATCTCCTTCAGCTCTCCTCCACTCTCATGAATTCCTCTTTCTACAATAATCCAACTCAACTCAACCATCCTGGTCTGGTTGGGATGGAAAATATGGTAAACCCTAACCTCATAACTTTGCTTGCTGCTTTATTACCATCTCACAGCCAAAACCCATATATCACACATCAAAATTTGCAGCAAACCCTAATTGGTGAAAGTTCTCTACTGCAAAACCAACTCCATAACTCTGGGCAATACTTCCAGCCATACAAGCCCCAAATGCCAGTTCAAGAAAACCAAATAAGTAATAAAGCAACATTGGAGCAAATATTTCCAATTAGTGACACTAATTTTAGCTGCCAAAATACTCTACCAAATTTGTGGCAATATAATGATGGAGCTGAATCAGCTATGTAA 753 0.425 MAAGGHAHVIWMPDKVHTVARSPVASDKGKSPSSAEKIGVKKGPWTPEEDQKLFDFIQKYGHGKWRALPKNAARVRWSTIAASLPGRTDNEIKNYWNTHIKKKLLKMGIDPVTHTPCLDLLQLSSTLMNSSFYNNPTQLNHPGLVGMENMVNPNLITLLAALLPSHSQNPYITHQNLQQTLIGESSLLQNQLHNSGQYFQPYKPQMPVQENQISNKATLEQIFPISDTNFSCQNTLPNLWQYNDGAESAM 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g1004 250 CDD SANT 44 100 IPR001005 -
Glsi04g1004 250 Pfam Myb-like DNA-binding domain 42 99 IPR001005 -
Glsi04g1004 250 MobiDBLite consensus disorder prediction 21 44 - -
Glsi04g1004 250 ProSiteProfiles Myb-like domain profile. 37 100 IPR001005 -
Glsi04g1004 250 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 76 190 - -
Glsi04g1004 250 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 37 104 IPR017930 -
Glsi04g1004 250 Gene3D - 40 106 - -
Glsi04g1004 250 SMART sant 41 102 IPR001005 -
Glsi04g1004 250 SUPERFAMILY Homeodomain-like 37 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g1004 Glsi-ChrGlsi04 8392441 8398224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g1004 19 200 MYB Transcription Factor Family AT4G21440 40.171 4.93e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Glsi04g1004 Myb_DNA-binding 1.4e-14 CL0123