Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0982 ATGACAGGTTTTCGGTCCGTGATGAATTATGGACTTCGACTTTTCGGCTTCATACTATTGCGTGAATACATAGAACTTATCATATCAATCTATTCAAATATCTTACAACATTTGTTGAAATTCATATTCTTATCTATGACCCTCAAATTCCGGGTCTCTGAAGAAAATTCCTTCCTAAAGAAAATAATGGAGAACTTTAGAGTTCTCTGTCTCTGCTCTTTGCTCTTATGCTTTATAAAAACCCTCACTTCAGAAGACAGTATCACTTCAAGCAAATTTATCCGAGATGATAAGACTTTAATTTCCGCTGGTGGGGATTTTGAACTGAGATTTTTTAGCCCTGCCTCTTCAAAAGCTCGATACTTGGGTATATGGTACAAGATATCTCCTTCTACAGTATTCTGGGTGGCCAACCGAGAAACACCGCTTAGCAATAGCAGTGGTGTTTTACAACTCAATGATCAAGGAGTTCTTCTCCTTCTTGATGGTACAAACAAAACCGTGTGGTCGTCCAAGACATCATCAGGCAGAACAGAGAACCCATTTGCTCAGCTCCTGGACTCGGGAAATCTTGTGGTGAAAAATGGAAATGGTAGTAGTAATTTGGACCAACTATTATGGCAGAGTTTTGACTATCCCTGCGATACATTGATGCCAGGAATGAAGCTCGGGTGGAATCAAGAAAAGGGTCTTGATAAATTTCTGTCGTCTTGGAGAAGCTCAGACGATCCTGGTCAGGGAGAGTACATAATAAAAATAGACCATCAAGGGTATCCACAAGCTGTTGAACTGAAAGGATCTGTGTTGAAGGTTAGATCAGGGTCATGGAATGGCTTCTCTTTCACTGGATTTCCAATTCATAACCCGGATCCAGTAGTCACTGTTGAGTTTGTGTTGAATGAAAAGGAGGTATATTACAAGTTTGAGCTTATAAACAGATCGATTTTCTCAAGATATATGGTGACCCCTACTGGGATTGGGCAGCGTTTTGATTGGGCAATTCAAACAAGCAGCTGGCAGATAATTAATACTGGTCCCCCAGATGAGTGTGATAATTATGCCTTTTGTGGTCCATATTCTGTCTGCAATATCAGTAACAGTCCCGTATGTGTATGCCTGAGAGGATATGAACCCAAGAATCTTAAAGAATGGAATGTGTCTAATTGGTCTAATGGCTGCATTCGAAGTGTTCCTTTGGACTGTGATAATGATAATGATGGCTTCAATAAGTACACAGGCATCAAGTTGCCAGACACTTCTTCTTCATGGTATAACAAGATCATGAGCCTTCAGGAATGTCAGAGAGTATGTCTGCAGAACTGTTCTTGTACAGCATATGCAAATTTAGATATTCGAGATGAAGGAAGTGGCTGCTTAATATGGTTTGATCAATTGTTTGACATGAGACAATTCCCTGCAGGGGGACAAGACCTCTATGTACGAGTCCCTGCTTCAGAGCTAGATCATGTCGAGAATAAAGGCCATGGGAGCATCGGCAAGAAGAAGCTAATAGGAATTGCATTTGGCTCTGCAATATCAATCACGGGCATCATAATCTTAGGATTGATTTCATTTGTAAGGAAAAGGAAACTTCAAAACGCAGGGAAGGAAGACATGGATCTACCAACCTTTGAATTGTCACTCATAGCTAAAGCTACAGATAATTTTTCAAGCAGTAACAAACTAGGAGAAGGTGGCTTTGGGCCTGTGTACAAGGGTATACTGGCAGATGGACAAGAGTTAGCTGTGAAAAGACTCTCAAAGAAATCTGTTCAAGGGTTGGAAGAACTAAAAAATGAAGTCTTGTTGATTGCCAAACTTCAGCATCGTAATTTGGTGAAGCTTCTTGGTTGCTGCATTCAGGGTGAAGAAAAAATGTTGATCTATGAATACATGCCAAACAAGAGCTTGGATCACTTTATATTTGATGAAACTAGAAGCAAGTTGTTGGATTGGTTTAAACGTTTCCACATTATTCATGGCATTGCCCGAGGACTTGTTTATCTTCACGTAGACTCTAGATTGAGAATTATTCATAGAGACCTGAAAACCAGCAATATTTTACTAGATGCAAATATGAATCCAAAAATATCAGATTTTGGCTTAGCTCGTATATTTTGGGGAGAACAAGTTGAGGCCAACACTACTAGAATTGTTGGAACATATGGTTATATGCCTCCTGAGTATGCTGTACATGGACAATTTTCAATAAAATCGGATGTCTTCAGTTTTGGCGTAATTATAATAGAGATCGTAAGTGGGAAGAAGAGTAGAGGATTTTTAGATCCAGAACACTACCTTAATCTTCTTGGACATGCATGGAGACTATGGATAGAAGAAAGGCCATTGGAACTGATGGATAGATTTTTAGGGGAAAGATGCACTCCATCTGAGGTCATAAGATGTATACAGGTGGGGCTGTTATGCGTGCAACAAAGACCTGAAGATAGGCCAGATATGTCAGCTGTGGTTCTAATGCTGAATGGTGAAAAATTATTGCCCCAACCAAAGGTTCCTGGCTTTTACACTGGGAGGGATATACCTTATGCAAATTCCTTGTCCCAAAGATTCATACTTTTCTCACACAATGAAATTTCCCAAACCGTATTAGAGGCAAGATGA 2622 0.3986 MTGFRSVMNYGLRLFGFILLREYIELIISIYSNILQHLLKFIFLSMTLKFRVSEENSFLKKIMENFRVLCLCSLLLCFIKTLTSEDSITSSKFIRDDKTLISAGGDFELRFFSPASSKARYLGIWYKISPSTVFWVANRETPLSNSSGVLQLNDQGVLLLLDGTNKTVWSSKTSSGRTENPFAQLLDSGNLVVKNGNGSSNLDQLLWQSFDYPCDTLMPGMKLGWNQEKGLDKFLSSWRSSDDPGQGEYIIKIDHQGYPQAVELKGSVLKVRSGSWNGFSFTGFPIHNPDPVVTVEFVLNEKEVYYKFELINRSIFSRYMVTPTGIGQRFDWAIQTSSWQIINTGPPDECDNYAFCGPYSVCNISNSPVCVCLRGYEPKNLKEWNVSNWSNGCIRSVPLDCDNDNDGFNKYTGIKLPDTSSSWYNKIMSLQECQRVCLQNCSCTAYANLDIRDEGSGCLIWFDQLFDMRQFPAGGQDLYVRVPASELDHVENKGHGSIGKKKLIGIAFGSAISITGIIILGLISFVRKRKLQNAGKEDMDLPTFELSLIAKATDNFSSSNKLGEGGFGPVYKGILADGQELAVKRLSKKSVQGLEELKNEVLLIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNKSLDHFIFDETRSKLLDWFKRFHIIHGIARGLVYLHVDSRLRIIHRDLKTSNILLDANMNPKISDFGLARIFWGEQVEANTTRIVGTYGYMPPEYAVHGQFSIKSDVFSFGVIIIEIVSGKKSRGFLDPEHYLNLLGHAWRLWIEERPLELMDRFLGERCTPSEVIRCIQVGLLCVQQRPEDRPDMSAVVLMLNGEKLLPQPKVPGFYTGRDIPYANSLSQRFILFSHNEISQTVLEAR 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0982 873 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 523 631 - -
Glsi04g0982 873 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 400 482 - -
Glsi04g0982 873 CDD PAN_AP_plant 397 483 - -
Glsi04g0982 873 SUPERFAMILY alpha-D-mannose-specific plant lectins 133 244 IPR036426 -
Glsi04g0982 873 Pfam Protein tyrosine and serine/threonine kinase 559 825 IPR001245 GO:0004672|GO:0006468
Glsi04g0982 873 ProSitePatterns Serine/Threonine protein kinases active-site signature. 677 689 IPR008271 GO:0004672|GO:0006468
Glsi04g0982 873 Gene3D - 80 210 IPR036426 -
Glsi04g0982 873 Gene3D Transferase(Phosphotransferase) domain 1 632 833 - -
Glsi04g0982 873 SUPERFAMILY Protein kinase-like (PK-like) 540 827 IPR011009 -
Glsi04g0982 873 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 70 814 - -
Glsi04g0982 873 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 80 210 - -
Glsi04g0982 873 ProSiteProfiles Bulb-type lectin domain profile. 85 206 IPR001480 -
Glsi04g0982 873 CDD STKc_IRAK 562 829 - -
Glsi04g0982 873 ProSiteProfiles PAN/Apple domain profile. 401 483 IPR003609 -
Glsi04g0982 873 Pfam PAN-like domain 401 468 IPR003609 -
Glsi04g0982 873 Pfam S-locus glycoprotein domain 272 380 IPR000858 GO:0048544
Glsi04g0982 873 SMART serkin_6 556 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0982 873 ProSiteProfiles Protein kinase domain profile. 556 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0982 873 Gene3D Phosphorylase Kinase; domain 1 521 631 - -
Glsi04g0982 873 Gene3D Hepatocyte Growth Factor 401 479 - -
Glsi04g0982 873 PIRSF SRK 58 873 IPR024171 GO:0004674
Glsi04g0982 873 SMART ntp_6 403 482 IPR003609 -
Glsi04g0982 873 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 632 835 - -
Glsi04g0982 873 CDD B_lectin 91 213 IPR001480 -
Glsi04g0982 873 SMART blect_4 91 213 IPR001480 -
Glsi04g0982 873 Pfam D-mannose binding lectin 132 239 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0982 Glsi-ChrGlsi04 8104055 8107695 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0982 484 842 Receptor kinase-like Gene Family AT4G23190 51.762 7.14e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g0982 PK_Tyr_Ser-Thr 1.2e-45 CL0016