Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0981 ATGGACATGAGAAAACATCCCTCTGAAGGACAAGACATTTACATTCGACTGGCTGCTTCTGAGCTAGTCTCAAATCAGACATGGAGTAAAAGGCACATTAACAAGAGGAAGCTTGTCTGGACTCTGGTAGCAGTTACTGCATTCAGCACAGGCTTAATAATATTAGCATTGGCCATCTACGTTAGAAGGAGAAAACTTGAGAAGCCAGGGAAGACAGACATAAGTAACTGGAATGATCACACAGAAACAAATGAGAAGAAAGACATAGACTTACCTATCATTGATTTATCAACTATTGCTAATGCCACTAATAATTTCTCCACCAGCAACATATTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGTACTGGCAAATGGGCAAGAGATTGCTGTCAAGCGGCTTTCCAAGAATTCTGGGCAAGGACCAGAAGAGTTCAAGAATGAAATTGTGTTAATTGCCAATCTGCAACACCGAAATCTTGTAAAGATTCTTGGGAACATGACAGATCAAACTAGAAGCAATTTACTAGATTGGAATAAGCGCTTCCAAATTATCAGTGGAATTGCTAGAGGGCTTCTTTATCTTCATCAAGATTCTAGACTACGGATTATCCATAGAGATCTTAAAACTAGCAATATTCTTTTGGACAATGATATGAATCCAAAAATATCAGACTTTGGACTAGCAAGGACGTTTAGGGGTGATCATACTAAGGTCAATACAAAAAGAGTTGTGGGAACTCATGGTTATATGCCTCCTGAGTATGCAGTTTATGGATCTTTTTCAGTGAAATCTGATGTCTTCAGCTTTGGTGTCATTGTGCTGGAGATAATTAGTGGGAAGAAGATCAGAGAATTTTGTGACCCAAATCATCACCTTAACCTTCTTGGACACGCATGGAGACTGTGGAGTGAAGAGAGGCCACTGGAGCTGATAAATGAATGTCTAGTTGTCTTCTGTGTTTCCCTCCTTCTCGGAAAACCCGATGTACCTTCTTTTTCCCCTTTATATATTTCCTTCCTCATTCTGTGTTTCCCATCGTTCTTCTCTCGCTATCTCTTCTTATTTCTGAGTATTATATCTCTCTCTGCAATGGCTGCGCCAAACCCACAAACTCACTTCCAAGATTGCCTGCCCATCATGGCCGGCAAGCTCGGTGGAGATGGCTTAATAGACGAGCTCTGCAATGGTTTTAATCTTTTAATGGATTCTGATAAAGGGGTCATAACGTTCGACAGCCTCAAGAGGAATTCCGCTTTGCTGGGGGGGCTACAGGGCTTGAGCGACGATGAGCTTCACTCTATGATAAGAGAAGGTGATTTTGACGGTGATGGGGCCCTGAATCAGTTGGAGTTCTGTGTCTTGATGTTCAGATTGAGCCCAGAACTTATGGAGGGGTCCAAATTGTGGTTAGAGGAAGTCCTTCAACAGGAACTCAAAGATTTTTTCTGA 1458 0.4184 MDMRKHPSEGQDIYIRLAASELVSNQTWSKRHINKRKLVWTLVAVTAFSTGLIILALAIYVRRRKLEKPGKTDISNWNDHTETNEKKDIDLPIIDLSTIANATNNFSTSNILGEGGFGPVYKGVLANGQEIAVKRLSKNSGQGPEEFKNEIVLIANLQHRNLVKILGNMTDQTRSNLLDWNKRFQIISGIARGLLYLHQDSRLRIIHRDLKTSNILLDNDMNPKISDFGLARTFRGDHTKVNTKRVVGTHGYMPPEYAVYGSFSVKSDVFSFGVIVLEIISGKKIREFCDPNHHLNLLGHAWRLWSEERPLELINECLVVFCVSLLLGKPDVPSFSPLYISFLILCFPSFFSRYLFLFLSIISLSAMAAPNPQTHFQDCLPIMAGKLGGDGLIDELCNGFNLLMDSDKGVITFDSLKRNSALLGGLQGLSDDELHSMIREGDFDGDGALNQLEFCVLMFRLSPELMEGSKLWLEEVLQQELKDFF 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0981 485 Gene3D Transferase(Phosphotransferase) domain 1 174 330 - -
Glsi04g0981 485 CDD EFh 403 458 IPR002048 GO:0005509
Glsi04g0981 485 ProSiteProfiles Protein kinase domain profile. 106 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0981 485 ProSiteProfiles EF-hand calcium-binding domain profile. 429 464 IPR002048 GO:0005509
Glsi04g0981 485 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 11 318 - -
Glsi04g0981 485 Pfam EF-hand domain pair 408 460 IPR002048 GO:0005509
Glsi04g0981 485 ProSitePatterns EF-hand calcium-binding domain. 442 454 IPR018247 -
Glsi04g0981 485 FunFam Lectin-domain containing receptor kinase A4.3 159 321 - -
Glsi04g0981 485 SUPERFAMILY Protein kinase-like (PK-like) 91 318 IPR011009 -
Glsi04g0981 485 SUPERFAMILY EF-hand 393 461 IPR011992 -
Glsi04g0981 485 SMART serkin_6 106 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0981 485 Gene3D - 373 484 - -
Glsi04g0981 485 SMART efh_1 433 461 IPR002048 GO:0005509
Glsi04g0981 485 Pfam Protein kinase domain 107 175 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0981 485 Pfam Protein kinase domain 185 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0981 485 FunFam Os08g0179000 protein 77 179 - -
Glsi04g0981 485 Gene3D Phosphorylase Kinase; domain 1 71 173 - -
Glsi04g0981 485 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0981 Glsi-ChrGlsi04 8096146 8100242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0981 23 322 Receptor kinase-like Gene Family AT4G23230 47.840 2.29e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g0981 Pkinase 9.5e-27 CL0016