Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0979 ATGGCTGTTCATCCGTCTGTGCTCTTTCTTACCAACCTGCTTTTGTTCTTCTCTCAATTTTCCTATGCAACTGACTCCATTACCCAGTTTCAGTCACTTCCTGATGGCAGGACCTTGGTTTCTAAAGATGGAAGCTTTGAACTGGGTTTCTTCAGCCCAGGTAGTTCTACAAACCGCTACCTGGGAATCTGGTACAAAAACATTCCAGTTAGAACTGTTGTTTGGGTTGCTAACCGCGAGAAACCAATCAAAGATAACTCCAGCTTGTTGACCATTGACAGAGAGGGACATCTTGTGCTTCTCAGCCAGAACGAGACAGCTGTTTGGTTTGTAAATTCAACAACAAAGGCCTTCAGTCCAGTCGTACGGCTTTTAGGCTCTGGAAACTTGGTACTAAGAGATGAGAAAGACCAAAATCCCCAAAACTACTTGTGGCAGAGCTTTGACTATCCTTCTGACACTTTTTTGCCAGGAATGAAGATTGGATGGGACCTTAAAACTGGTCTTAATAGGCGCATGACTGCATGGAAGAGCTGGGACGACCCTTCTCCGGGAGACTTCATATGGGAGCTCGTACTTCACAATAACCATGAAGGAGTTATATGGAAGGGATCGACAGAGTATTACAGGAGTGGCCCCTGGAATGGCCTTCGGTTCAGTGGTGCCCCCGAATTGAGGCACAATCCACTTTTTGAGTTCAAGTTTGTCTCCAATAAGGATGAGGTGTATTACACGTATAATCTCAAGAATGAGTCAGTGATTTCAAGAATTGTCATGAACCAAACAATATACTCTCGTCAGCGCCTCACGTGGATTGAAGAAGCTCAAAGTTGGAGGCTTTTTGCTTCTGTGCCAAGAGATGACTGCGATCACTATAATCTTTGTGGCCCATATGGAAATTGCATCATGGGTGAGGCGCCAATATGCCAGTGCTTAAAAGGTTTCAAGCCAAAAGTACCCCAAAACTGGGACGTGATGGACTGGACTCAAGGATGTGTCCACAGTGAACCATGGAGTTGCAGGGTAAAAAACAGAGATAATTTTCTTAAATTTAGTGGACTGAAATTGCCAGATACTACACATTCTTGGGTCAATGGAAGTATGACACTCGAGGAGTGCAAAGCCAAATGCTTGGAAAACTGTTCCTGTACTGCTTATGCTTTCTCAGATATCAGGGGAGGAGGTACTGGCTGTGCCATCTGGTTCGGTGAGCTAATTGATATTAGACAGATTCAACTTACTGACCAAGATCTATATATTCGCCTAGCAGTTCAAGAAACAGCTGACCATGAAAATGCAGATGGAAATAAGATAAAGGTTGTTGTAGTAACAGTCACCATTTTATTGGCTCTTGTGATGTTTTTCACTTTCTTTTACTTTTTCAAGAGCAGAAGAATGTCTAGAGGTTCTACTGCCCAAAGTAAACTGCTAAATTGGTCCAAACGTTTTTGCATTATATGTGGAATCGCTCGGGGACTTCTCTATCTTCATCAAGATTCTAGATTGAGGATCATCCACAGAGATCTAAAAGCAAGTAATGTATTATTGGATAATGAATTGAACCCGAAAATTTCAGATTTTGGCATGGCAAAGATCGTTGGAGGAGATCAAATTGAAGGGAATACAACCAGAGTGGTTGGTACATATGGTTATATGGCACCTGAATATGCTTTAGATGGACTATTTTCCACTAAATCTGATGTATTCAGTTTTGGAATATTACTATTGGAAATAGTGAGTGGAAAGAAAAACAAAGGGCTTTCTTATCCAAAACAGAGTCTTAACCTTATTGGGCATGCATGGAGGTTGTGGAGGGAGGGCATCCCACTGGAATTGATGGATGCACGTTTGGGGGATTCGTGTGTTGCGTCAGAAGTATTGCATTGCATCCATATTGGTCTTCTTTGTGTGCAACACGATCCTGATGATAGGCCAGACATGGCATCTGTGGTTGTGATGTTGAGCAGTGAGGGTGTCTTGCCTCAGCCCAAGGAGCCTGGTTTCCTAATAGAAAAGACCTTAGTTAAAGGAGAATCTTCTTCTTCTGGAAATCATATGACTTCTTCGACCAATGCATTATCTATCACCCAGTTAGAGGCCAGATAA 2106 0.4259 MAVHPSVLFLTNLLLFFSQFSYATDSITQFQSLPDGRTLVSKDGSFELGFFSPGSSTNRYLGIWYKNIPVRTVVWVANREKPIKDNSSLLTIDREGHLVLLSQNETAVWFVNSTTKAFSPVVRLLGSGNLVLRDEKDQNPQNYLWQSFDYPSDTFLPGMKIGWDLKTGLNRRMTAWKSWDDPSPGDFIWELVLHNNHEGVIWKGSTEYYRSGPWNGLRFSGAPELRHNPLFEFKFVSNKDEVYYTYNLKNESVISRIVMNQTIYSRQRLTWIEEAQSWRLFASVPRDDCDHYNLCGPYGNCIMGEAPICQCLKGFKPKVPQNWDVMDWTQGCVHSEPWSCRVKNRDNFLKFSGLKLPDTTHSWVNGSMTLEECKAKCLENCSCTAYAFSDIRGGGTGCAIWFGELIDIRQIQLTDQDLYIRLAVQETADHENADGNKIKVVVVTVTILLALVMFFTFFYFFKSRRMSRGSTAQSKLLNWSKRFCIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDNELNPKISDFGMAKIVGGDQIEGNTTRVVGTYGYMAPEYALDGLFSTKSDVFSFGILLLEIVSGKKNKGLSYPKQSLNLIGHAWRLWREGIPLELMDARLGDSCVASEVLHCIHIGLLCVQHDPDDRPDMASVVVMLSSEGVLPQPKEPGFLIEKTLVKGESSSSGNHMTSSTNALSITQLEAR 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0979 701 PIRSF SRK 1 475 IPR024171 GO:0004674
Glsi04g0979 701 PIRSF SRK 469 701 IPR024171 GO:0004674
Glsi04g0979 701 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 10 462 - -
Glsi04g0979 701 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 462 662 - -
Glsi04g0979 701 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Glsi04g0979 701 CDD PAN_AP_plant 339 423 - -
Glsi04g0979 701 Gene3D Hepatocyte Growth Factor 339 423 - -
Glsi04g0979 701 SMART serkin_6 386 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0979 701 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 182 IPR036426 -
Glsi04g0979 701 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 339 422 - -
Glsi04g0979 701 MobiDBLite consensus disorder prediction 678 701 - -
Glsi04g0979 701 SUPERFAMILY Hairpin loop containing domain-like 345 392 - -
Glsi04g0979 701 CDD B_lectin 31 151 IPR001480 -
Glsi04g0979 701 SMART ntp_6 343 422 IPR003609 -
Glsi04g0979 701 ProSiteProfiles PAN/Apple domain profile. 340 424 IPR003609 -
Glsi04g0979 701 Pfam S-locus glycoprotein domain 209 318 IPR000858 GO:0048544
Glsi04g0979 701 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 148 - -
Glsi04g0979 701 Gene3D Transferase(Phosphotransferase) domain 1 465 660 - -
Glsi04g0979 701 SUPERFAMILY Protein kinase-like (PK-like) 473 657 IPR011009 -
Glsi04g0979 701 ProSiteProfiles Protein kinase domain profile. 386 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0979 701 Pfam D-mannose binding lectin 72 177 IPR001480 -
Glsi04g0979 701 Pfam PAN-like domain 340 408 IPR003609 -
Glsi04g0979 701 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Glsi04g0979 701 Pfam Protein tyrosine and serine/threonine kinase 473 651 IPR001245 GO:0004672|GO:0006468
Glsi04g0979 701 SMART blect_4 30 151 IPR001480 -
Glsi04g0979 701 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Glsi04g0979 701 Gene3D - 18 148 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0979 Glsi-ChrGlsi04 8092027 8095097 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0979 472 701 Receptor kinase-like Gene Family AT4G23150 53.617 5.73e-81 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g0979 PK_Tyr_Ser-Thr 1.8e-25 CL0016