Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0977 ATGTGGAAGGGCTCATCAGAGTACCACAGAAGTGGCCCTTGGAATGGCAATAGTATTGTTGGTAAATCCAATCCAATTTTTAAGTTGCAATTCATCTCCAATGAGGATGAGGTGGTTTACACATCCAACCTCCAGGATAAGTCGTGTACTTTAGATGATACAGAGGAAGACTCGACAGTGAAGAATGATGAAGGAGAACAAGAAGACTTAGATCTGCCTTTCTTTGACCTTGCTACAATTGTTCGTGCCACTAATAACTTCTCAAGTGACAAGAAGCTTGGCCAAGGTGGTTTTGGGCCTGTATACAGGGGTACACTGGCTGATGGAAAAGAGATTGCTGTCAAGCGGCTTTCACAGACTTCTGGACAAGGATTGAAAGAATTTAAGAATGAAGTTGTATTGTGTGCCAAACTTCAGCACCGGAATCTTGTTAAGGTTCTTGGGTGTTGCATCCAAGGAGATCAGAAAATGCTCATCTATGAATACATGTCCAACAATAGCCTTGATTCCTTTCTTTTTGATCCTAGTGAAAGCAAATTCCTAGATTGGTCTAGACGCTTTCACATTATACTTGGAATTGCCCGAGGACTTCTCTATCTTCATCAAGATTCCAGATTAAAGATCATACACAGAGATCTTAAAGCTAGTAATGTTTTGTTAGATAGGGAGTTAAACCCAAAAATTTCAGATTTTGGCTTGGCGAGAATATTTGATGTCGACCAGATTGAAGGAAATACAAATAGAGTGGCTGGTACATATGGTTATATGGCACCAGAATATGCCATTCATGGACTATTCTCTATAAAATCTGATGTATTTAGCTTTGGTGTATTATTGCTGGAGATAGTAAGTGGAAAGAAAAACCGAGGGGCCCCCTATCCAAACCAGGGTTTTAATCTTATTGGACATGCATGGAGATTGTGGAAGGAGGGTAACCAAATATATTTAATTGATGGTTGTTTGGGTGACACTTACATTTTATCAGAAGTATTGCGCTGCATTCATGTTGGCCTTCTATGTGTGCAACTGCATCCTGAGGATAGGCCAAACATGGCATCAGTGATTGTGATGTTGAGCAGTGAGAGTGCCTTGCCTCAGCCCAAGGAGCCTGGTTACCTAATAGAAAGAATTTTAGTTGAAGGAGAATGTTCTTCTGGCAGGCAGGTGTCTTCTTCAACTAATGAGATAACTATATCTCTGTTAGAGGCTAGATAG 1215 0.4058 MWKGSSEYHRSGPWNGNSIVGKSNPIFKLQFISNEDEVVYTSNLQDKSCTLDDTEEDSTVKNDEGEQEDLDLPFFDLATIVRATNNFSSDKKLGQGGFGPVYRGTLADGKEIAVKRLSQTSGQGLKEFKNEVVLCAKLQHRNLVKVLGCCIQGDQKMLIYEYMSNNSLDSFLFDPSESKFLDWSRRFHIILGIARGLLYLHQDSRLKIIHRDLKASNVLLDRELNPKISDFGLARIFDVDQIEGNTNRVAGTYGYMAPEYAIHGLFSIKSDVFSFGVLLLEIVSGKKNRGAPYPNQGFNLIGHAWRLWKEGNQIYLIDGCLGDTYILSEVLRCIHVGLLCVQLHPEDRPNMASVIVMLSSESALPQPKEPGYLIERILVEGECSSGRQVSSSTNEITISLLEAR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0977 404 Gene3D Transferase(Phosphotransferase) domain 1 163 368 - -
Glsi04g0977 404 Gene3D Phosphorylase Kinase; domain 1 45 162 - -
Glsi04g0977 404 CDD STKc_IRAK 93 358 - -
Glsi04g0977 404 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 163 366 - -
Glsi04g0977 404 Pfam Domain of unknown function (DUF3403) 359 404 IPR021820 GO:0004674
Glsi04g0977 404 Pfam Protein tyrosine and serine/threonine kinase 89 355 IPR001245 GO:0004672|GO:0006468
Glsi04g0977 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Glsi04g0977 404 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0977 404 SMART serkin_6 87 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0977 404 SUPERFAMILY Protein kinase-like (PK-like) 71 358 IPR011009 -
Glsi04g0977 404 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 52 162 - -
Glsi04g0977 404 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 61 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0977 Glsi-ChrGlsi04 8074678 8077612 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0977 75 404 Receptor kinase-like Gene Family AT4G11530 56.083 5.32e-132 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g0977 PK_Tyr_Ser-Thr 3.3e-49 CL0016