Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0972 ATGGCAGATGATCAATTTCATCATGCAACTGGAAACTGGTGGGACTCAGTAAGAAATAACGTCAGGTTCGAAAGTGGGGCTATATCACAATCATCTTCCTCCTCTGGCCTTACCAACCTAAGCTGCAACTTCACTTGGCAGCAACCTACAGATATGGACGACCCAAGGTCTTCCATGGATACCCACAAGCTTCATCCTTCAGATTCTGCCTCTTCCTCCGACCCCAACTTGCACATGATGGGTTTAGGCCTTTCCTCCCACCATCCTCCCATGGATAATTGGAATCAAGCATCTTTTCTACGAGGAGAGAAAGGGGTGGGATCGATGGTTCAAGAGAATTTGAGCCCATCAAGCACGAATTTTCAGCAAGAAACTGGGATGGGGTTGTGTAATCAAGTCGAATGGAGATCAGAAAAGCTATTATTTTCTGGAGAATCATCGTCCCCAAATGATCATCATCATCAGTTCAAGCAAGCGAATATGAATAGGGGTTTCTCTCTAGATCAAACCCAGTTTAGTCCTCAATATAGCTCTGGTGATAATAATAGCTCTGTGACCACAAGCCAAGGCTTGGCCCCTACTACTTTCCACATGGATTCTTCATCAGCTTTATATGGACTATTAGGACCTGATCATAATCAAACCCAGCAAACTCCATTCGAGAATATGAATCGGCCCCTGCATAATTTTCCCTACCCAGCAGCAGCAATAACCTATGGGTCATTAGTGAACTCTAATGATCAGTTAATGCCAGCTTCTTGGTCCAAAGTTCCTCAGTTTCTCCGACCTTCACCTCCAAAACAACAACCTCAAAATAATCAGCTGCATTTCACTAACAACGCCCCCTTCTGGAACGCTTCTGAGGCTGCCATTAAAGATGGTCGTTCCAGCTTCTTCCCTTCGCTGCAACCTCCGTTTCCCATGCCAAATTTTGATGTACAATCAAAGAATATATGTGGAGCTCGAGAGACGGGTGGTGTGGTGAAGAAAAGTGGGAGTGAGACAGCAGCAAAAAAGGCTAGAAATGAAACCCCATCTTCTTTGCCAGCTTTTAAGGTGAGAAAAGAGAAGATGGGGGACAGAATCACTGCACTTCAACAATTGGTTTCGCCCTTCGGAAAGACTGATACAGCCTCTGTGCTCTCTGAAGCCATTGAATACATCAAATTCCTCCATGAACAAATCACTAGTTGTGGTAAATCCAAGGAATCTGAGGGTCCAAAACAAGACCTTAGAAGCCGAGGGTTGTGTCTGGTGCCGGTTTCAAGTACATTCCCAGTGACTCACGAAACAACAGTTGATTTTTGGATGCCAACCTTCGGAGCTACTTTCAGATAA 1338 0.4484 MADDQFHHATGNWWDSVRNNVRFESGAISQSSSSSGLTNLSCNFTWQQPTDMDDPRSSMDTHKLHPSDSASSSDPNLHMMGLGLSSHHPPMDNWNQASFLRGEKGVGSMVQENLSPSSTNFQQETGMGLCNQVEWRSEKLLFSGESSSPNDHHHQFKQANMNRGFSLDQTQFSPQYSSGDNNSSVTTSQGLAPTTFHMDSSSALYGLLGPDHNQTQQTPFENMNRPLHNFPYPAAAITYGSLVNSNDQLMPASWSKVPQFLRPSPPKQQPQNNQLHFTNNAPFWNASEAAIKDGRSSFFPSLQPPFPMPNFDVQSKNICGARETGGVVKKSGSETAAKKARNETPSSLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQITSCGKSKESEGPKQDLRSRGLCLVPVSSTFPVTHETTVDFWMPTFGATFR 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0972 445 SMART finulus 353 397 IPR011598 GO:0046983
Glsi04g0972 445 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 352 397 IPR036638 GO:0046983
Glsi04g0972 445 MobiDBLite consensus disorder prediction 169 193 - -
Glsi04g0972 445 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 426 - -
Glsi04g0972 445 MobiDBLite consensus disorder prediction 64 79 - -
Glsi04g0972 445 Gene3D - 352 412 IPR036638 GO:0046983
Glsi04g0972 445 MobiDBLite consensus disorder prediction 46 81 - -
Glsi04g0972 445 CDD bHLH_AtbHLH_like 348 395 IPR045239 -
Glsi04g0972 445 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0972 Glsi-ChrGlsi04 7992402 7994676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0972 101 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 41.562 2.53e-61 202