Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0971 ATGGATCTTCTCTGTGATGCATACGGCAACGCCTCTGACGACGAGGAAGAACAACAACCCAAACGTCAGAGGCTTGCACTCTCTTCCTCCAACGCACCAAAACCCTATCTTCCTCCTCCTTCTCCTCCTCCGAAACAGTTCCTGCATCTCCAAACACAACCTTCGCTTTCTGGAAGATACATTTCCAAGCGACAAAGAGCACTTCAAAGCTCTTCTCCCACTGTTTCTGACCCGCCTCCGCTTCCAGTTCAATCTTCCGTCACACTATCCGGAAGTATCTTGGATACTGCTCTTCCTTATAGCATTTTGTCATTGTTGAGAAATAAAGCAAAGGGTCATCAAAATCTGAAACTGATACCAGAAAAGCTATATGAAGCTCTACATGGCCATACAAAAGCTGTCAATGCTATACAATGGTCTCCCACTTACTCTCATCTCCTTGCATCTGCTGGGATGGACCATATGGTTTGCATTTGGAATGTTTGGAGCAGAGATCAGAAGAAAGCACGTGTGTTAAGCTTCCACAATGCAGCAGTGAAAGATATGAAATGGTCTCAGCAAGGACACTTACTACTTTCTTGTGGCTATGATTGCACATCGAGGTTGGTTGATGTAGAAAAGGGAATTGAGACTCAGGTTTTCAGTGAAGATCAAATTGTTGGAGTTATAAAATTCCATCCAGACAATTCAAATCTCTTCCTTTCTGGGGGATCAAAGGGTCATATCAGACTATGGGACATCAGGACTGGCAAAGTAACCCATAATTTTATTCGAAGTTTAGGTTCTATTCTGGATGTTGAGTTTACAATTAATGGGAATCAATTCATTTCTTCTAGTGATGTATCTGGGAGCAATGTCAGTGAGAAATCTATCATTGTTTGGGATGTGTCAAGACAGGTTCCGCTGTCTAATCAGGTTTATGTGGAAGCTTTTACCTGTCCCTGCATAAGGCGCCACCCATTTGAACCTGTTTTCGTTGCCCAGTCAAATGGGAATTATATTGCAATCTTTACTACGACTCCACCTTTCAGACTAAACAAATATAAGAGGTATGAGAGCCACGGGGTCTCTGGGTTCCCAATTAAGTGCAATTTTAGTTTGGACGGGAAGAGGCTTGCTTCTGGTTCTTCAGATGGCTGTATTTACCTTTATGATTATCAATCATCTAAGGTTGTTAAAAAAATCAAGGCCTATGACCAAGCATGTATAGACGTTGTTTTTCATCCTGTTATACCCAATGTAATTGCTTCATGCTCCTGGGATGGAAGCATCTCAATATTTGAGTAG 1287 0.4211 MDLLCDAYGNASDDEEEQQPKRQRLALSSSNAPKPYLPPPSPPPKQFLHLQTQPSLSGRYISKRQRALQSSSPTVSDPPPLPVQSSVTLSGSILDTALPYSILSLLRNKAKGHQNLKLIPEKLYEALHGHTKAVNAIQWSPTYSHLLASAGMDHMVCIWNVWSRDQKKARVLSFHNAAVKDMKWSQQGHLLLSCGYDCTSRLVDVEKGIETQVFSEDQIVGVIKFHPDNSNLFLSGGSKGHIRLWDIRTGKVTHNFIRSLGSILDVEFTINGNQFISSSDVSGSNVSEKSIIVWDVSRQVPLSNQVYVEAFTCPCIRRHPFEPVFVAQSNGNYIAIFTTTPPFRLNKYKRYESHGVSGFPIKCNFSLDGKRLASGSSDGCIYLYDYQSSKVVKKIKAYDQACIDVVFHPVIPNVIASCSWDGSISIFE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0971 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 251 - -
Glsi04g0971 428 MobiDBLite consensus disorder prediction 1 49 - -
Glsi04g0971 428 MobiDBLite consensus disorder prediction 33 47 - -
Glsi04g0971 428 Pfam WD domain, G-beta repeat 223 246 IPR001680 GO:0005515
Glsi04g0971 428 Pfam WD domain, G-beta repeat 169 202 IPR001680 GO:0005515
Glsi04g0971 428 Pfam WD domain, G-beta repeat 351 385 IPR001680 GO:0005515
Glsi04g0971 428 Pfam WD domain, G-beta repeat 127 160 IPR001680 GO:0005515
Glsi04g0971 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 127 169 IPR001680 GO:0005515
Glsi04g0971 428 SUPERFAMILY WD40 repeat-like 112 427 IPR036322 GO:0005515
Glsi04g0971 428 SMART WD40_4 249 295 IPR001680 GO:0005515
Glsi04g0971 428 SMART WD40_4 207 246 IPR001680 GO:0005515
Glsi04g0971 428 SMART WD40_4 346 385 IPR001680 GO:0005515
Glsi04g0971 428 SMART WD40_4 388 428 IPR001680 GO:0005515
Glsi04g0971 428 SMART WD40_4 120 160 IPR001680 GO:0005515
Glsi04g0971 428 SMART WD40_4 165 204 IPR001680 GO:0005515
Glsi04g0971 428 Gene3D - 105 428 IPR015943 GO:0005515
Glsi04g0971 428 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 15 428 - -
Glsi04g0971 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 255 IPR001680 GO:0005515
Glsi04g0971 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 127 161 - -
Glsi04g0971 428 ProSitePatterns Trp-Asp (WD) repeats signature. 147 161 IPR019775 -
Glsi04g0971 428 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0971 Glsi-ChrGlsi04 7969304 7975372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0971 220 409 Miscellaneous Gene Families AT5G08390 21.053 2.14e-06 48.1