Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0968 ATGGCTACTCCGAGTTCCCGCTCAAGCGTGCCAGAGAGAAGTGTGGGAAAGAGGAAGCAACTCGAGGAAGGCCAAAACTCTCATCCTCCATTGTTGAGCTTGAAGAGAAGGAAGGAGACTCTGTTCAAGAAATGCAGAGAACTCACTGTAAAAACGGATGTCCAAGTTTGTGCGATTTGTATCGGATCCGACGGAGAAATCGATGCATGGCCAGATCCTGAGAAAGCCAAGGCCATTCTCATGAAGTATAATGAATTGAAATTCCAGTGTGTTGAAGTACACAACGGTGAGATGGCGATGGAAAATTATACAAAACCCTTGGATTCGAAATTAGGTTTGGAAAAACTTTCTGGAGAGTCGCTGATGAAACTGTGGAGCGATTTGGATTCAAAATTGGAAACTATCGACGAGAAAATAGCACAGAAGCTTAACAGCAAAGCTACCAATTTTTGCAATGATGAAATTTTTTTGGGGAATATCACACAACCATACTACCCGCTGCCGTGGGTTTCTTCGGTAGAACCAAATGGAATGAACCAGATTTGGGAGCCAGAATTGCATTATACGAACAATTTTAGTTGTGAAGATGATATTGGGTCAATGTGTAATAATCAAGCTTCGGGAAGAAGTGAGAGAGTCTGCAATGGTGGAGATTTTCCATCTGGGATTTGGGCTGGTGATGGGGGATTTGGGAGGGACGACATTGGTGACTGCAATACCACCAGCAACCATAGTTTTCTGCCTGAAGATCATTACGATGTCTATCTTCTACCAGAATTGCCTAATACGAACAATTTTAGTGGTGAAGATTATACTGGGTCAAAGGGTAATAATCAAGCTTTGGGAAGAAGTGGCAGAGTGTGCAATGGTGGAGATTTTCCATCTGGGATTTGGACTGGTAATGGTGGACTTGGGAGGGACGACATTGAAGACTGCCATACCAACAGCAACCTTAATTTTCTGCTTGAAGATCATTATAATGGCTATCTTCTCCCTGGTAGTGCCAATTCTGGGTTTCAGTAG 1023 0.4321 MATPSSRSSVPERSVGKRKQLEEGQNSHPPLLSLKRRKETLFKKCRELTVKTDVQVCAICIGSDGEIDAWPDPEKAKAILMKYNELKFQCVEVHNGEMAMENYTKPLDSKLGLEKLSGESLMKLWSDLDSKLETIDEKIAQKLNSKATNFCNDEIFLGNITQPYYPLPWVSSVEPNGMNQIWEPELHYTNNFSCEDDIGSMCNNQASGRSERVCNGGDFPSGIWAGDGGFGRDDIGDCNTTSNHSFLPEDHYDVYLLPELPNTNNFSGEDYTGSKGNNQALGRSGRVCNGGDFPSGIWTGNGGLGRDDIEDCHTNSNLNFLLEDHYNGYLLPGSANSGFQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0968 340 Gene3D - 32 89 IPR036879 GO:0003677|GO:0046983
Glsi04g0968 340 MobiDBLite consensus disorder prediction 1 33 - -
Glsi04g0968 340 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 70 IPR002100 GO:0003677|GO:0046983
Glsi04g0968 340 ProSiteProfiles MADS-box domain profile. 18 74 IPR002100 GO:0003677|GO:0046983
Glsi04g0968 340 SUPERFAMILY SRF-like 21 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0968 Glsi-ChrGlsi04 7890530 7891552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0968 33 86 MADS-box Gene Family AT3G18650 50.909 2.23e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi04g0968 SRF-TF 1.1e-08 No_clan