Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0960 ATGATGTCAAAATCGTATACAAATCTTCAAGATTTGGCTTCAGGGAATTTCCCAGCAATGGGTAGGGACACTAAGGAAAGAAGGCGGCTCACAAGGGTTAAGAGTGTCCCTGGGATTGTCTCAGAACTTGATGATGATCAGGCACACAGTGTTTCTTCTGATAATCCATCAACTGCTTCCACAGATAGGGTGATTATCGTTGCAAATCAGCTTCCTTTAAAAGCAAAACGGAAAGAAGATAGCAAAGGATGGAGTTTCAGTTGGAATGAGGATTCATTGCTTTTACAGCTTAAGGATGGATTTCCAGAAGACATGGAGGTTCTTTACGTTGGGTCATTGCGGGCTGATGTTGATCCTGCTGAACAGGATGATGTATCACAGTACTTATTAGAAAAATTCAACTGTCTTCCTACTTTTCTACCCCCTGATGTTGTGGATAAATTTTATGATGGCTTCTGCAAAAGGCAGTTATGGCCGCTGTTTCATTACATGTTGCCCTTTTCAACTGATAAAGGCCAACGTTTTGATCGCTCTAACTGGGAAGCCTATGTGTTGGCAAATAAATTCTTTTTTCAGAAGGTTGTTGAAATAATAAATCCAGAGGATGATTATATTTGGATTCATGATTACCATTTGATGGTTTTGCCATCCTTTATAAGAAGGCGCTTTAACAGGGTTAAAATGGGATTTTTCCTGCATAGTCCCTTTCCATCATCTGAGATATATAGGACTCTTCCTGTCAGGGAAGAGATACTTAAAGCTTTACTAAACTCTGATATCATTGGTTTTCACACCTTTGACTATGCTCGTCATTTCCTTTCCTGTTGCAGTCGTATGTTGGGTCTGGAGTATGAGTCAAAAAGGGGCTACCTAGGATTGGAATATTATGGAAGGACTATCAGTGTTAAGATTATGCCGGTTGGAGTTCACATGGGTCGGATTGAATCAGTTATGAAAACGACAGATGAGGAGTGTAAGGTTAAGGAGCTTCAACAAGAATATGAAGGAAAAACAGTGTTGCTTGGTGTTGATGATATGGACATTTTTAAAGGCATTAATTTGAAGATATTGGCTATGGAGCAGATGCTCAAACAACATCCTGAATGGCTAGGAAGAGCTGTGCTGATACAGATAGTAAATCCTGCTGGGGGTAAAGGGTTGCATTTAGAGGAAATACAAGCTGAAATACAAGAAAGCTGCAGCAGGATCAACAGAGTATTTGGTCGGCCTGGTTACGAACCAATTGTTTTTATTGATAGAGAGGTTTCAATTACTGAAAAAGTTGCGTATTACAGGATTGCTGAGTGTGTAGTTGTTACAGCTGTAAGGGATGGAATGAACCTAACTCCTTATGAATATATTGCTTGTAGACAGGGAATATCTGCTTCTGAATCAAGTTCCGATGTCAGTGGATTGAAGAAGAGTATGCTTGTAATATCAGAATTTATTGGGTGTTCTCCCTCTCTTAGTGGTGCTATTCGTGTCAACCCATGGAATGTTGAAGCAACTGCAGAGGCTATGAATGAGGCCATCTCAATGCCTGCTGGAGAGAAACAGTTGCGGCATGAAAAGCATTATCGGTATGTTAGCACTCATGATGTGGCTTATTGGTCACGCAGTTTCTTGCAAGATATGGAGAGGGCTTGCTTAGACCTTCTAAAGAAAAGATGCTGGGGAATAGGTCTTAGCTTTGGATTTAGAGTTGTGGCACTTGACCCTAATTTTAGAAAGCTCTCAATTGATGCTATGGTTTCAGCTTACAAGAGGGCAAGGAGTAGAGCCATTTTGTTGGATTATGATGGTACTGTAATGCCACAGAACTCCATTAATAAGAGTCCAAGTCAGGAGGTCATCTCTATTCTGAACGCGCTTTCTGCAGACTCCAAAAATGTAGTTTTTATTGTTAGTGGAAGGGGGAGGGATAGCTTAAGTAAGTGGTTCACTCCCTGCAAAAACCTTGGTATTGCGGCAGAACATGGATACTTTTTGAGATGGTCTCAAAGTGAAGAATGGAAAATTTGTGGTAAGAGCTCCGAATTTGGCTGGACGCAGATTGCTGAACCTGTAATGAAATTATATACAGAGGCAACTGATGGTTCTAGCATCGAAAAAAAAGAAAGTGCTTTGGTTTGGCAATACCGGGATGCAGACCTTGATTTTGGATCTTCTCAGGCTAAGGAAATGTTGGATCATCTAGAGAGTGTTTTGGCCAACGAGCCTGTTGCTGTGAAGAGTGGTCAGTTCATTATTGAAGTAAAGCCCCAGGATGTGAGCAAAGGATTAGTTGCAGAAAAGATATTTTCATCAATGGCTGAGAAAGGCAAACAGGCTGACTTTGTGATGTGTGTTGGTGATGACAGATCAGATGAGGACATGTTTGAAATAATTAGTAGTGCAACGTCAAGAAATATTCTTTCTGCCAATGCTTCAGTATTTGCTTGCACAGTTGGACAAAAACCCAGCAAAGCTAGGTATTATCTGGATGATACCACTGAAGTAATAAGCATGCTAGAATCTTTGGCTGAAGAGTCAGAAGATTCCCACCTTTCAGATTCTTCTTGA 2562 0.4067 MMSKSYTNLQDLASGNFPAMGRDTKERRRLTRVKSVPGIVSELDDDQAHSVSSDNPSTASTDRVIIVANQLPLKAKRKEDSKGWSFSWNEDSLLLQLKDGFPEDMEVLYVGSLRADVDPAEQDDVSQYLLEKFNCLPTFLPPDVVDKFYDGFCKRQLWPLFHYMLPFSTDKGQRFDRSNWEAYVLANKFFFQKVVEIINPEDDYIWIHDYHLMVLPSFIRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYESKRGYLGLEYYGRTISVKIMPVGVHMGRIESVMKTTDEECKVKELQQEYEGKTVLLGVDDMDIFKGINLKILAMEQMLKQHPEWLGRAVLIQIVNPAGGKGLHLEEIQAEIQESCSRINRVFGRPGYEPIVFIDREVSITEKVAYYRIAECVVVTAVRDGMNLTPYEYIACRQGISASESSSDVSGLKKSMLVISEFIGCSPSLSGAIRVNPWNVEATAEAMNEAISMPAGEKQLRHEKHYRYVSTHDVAYWSRSFLQDMERACLDLLKKRCWGIGLSFGFRVVALDPNFRKLSIDAMVSAYKRARSRAILLDYDGTVMPQNSINKSPSQEVISILNALSADSKNVVFIVSGRGRDSLSKWFTPCKNLGIAAEHGYFLRWSQSEEWKICGKSSEFGWTQIAEPVMKLYTEATDGSSIEKKESALVWQYRDADLDFGSSQAKEMLDHLESVLANEPVAVKSGQFIIEVKPQDVSKGLVAEKIFSSMAEKGKQADFVMCVGDDRSDEDMFEIISSATSRNILSANASVFACTVGQKPSKARYYLDDTTEVISMLESLAEESEDSHLSDSS 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0960 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 315 - -
Glsi04g0960 853 Gene3D - 592 696 IPR023214 -
Glsi04g0960 853 Gene3D - 721 851 IPR023214 -
Glsi04g0960 853 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Glsi04g0960 853 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Glsi04g0960 853 NCBIfam HAD-IIB family hydrolase 595 796 IPR006379 -
Glsi04g0960 853 NCBIfam trehalose-phosphatase 590 841 IPR003337 GO:0003824|GO:0005992
Glsi04g0960 853 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 592 709 - -
Glsi04g0960 853 Gene3D Glycogen Phosphorylase B; 317 530 - -
Glsi04g0960 853 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 32 842 IPR001830 GO:0003824|GO:0005992
Glsi04g0960 853 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 722 853 - -
Glsi04g0960 853 FunFam Alpha,alpha-trehalose-phosphate synthase 317 530 - -
Glsi04g0960 853 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 62 549 - -
Glsi04g0960 853 SUPERFAMILY HAD-like 593 841 IPR036412 -
Glsi04g0960 853 CDD HAD_TPP 594 833 - -
Glsi04g0960 853 Gene3D Glycogen Phosphorylase B; 55 316 - -
Glsi04g0960 853 Pfam Trehalose-phosphatase 596 830 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0960 Glsi-ChrGlsi04 7822466 7826541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0960 1 850 Trehalose Biosynthesis Gene Families AT1G06410 77.294 0.0 1373