Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0959 ATGACTTTATTGGATCAATTGAAAGGAGCCTCCATCTTTTCTAAAATTGACTTGAGGTCAGGATATCATCATATTAGGATTAAGGAGGAGGACGTACTAAAAACTGCCTTCAGGACTAGTGGGGTAGCCGTAGATCCTAACAAGACGGAAGCAGTGATTCAGTGGGAGAGACCAAAGACGGTTACGGAAGTCAGAAGTTTCCTGGGTTTGGCAGGATACTACAGGAGGTTTATACAAAACTTCTCTCGTATAGCCTTGCCATTGACTAAATTAACCAGGAAGGGAAGTCCTTTCACATGGACTGATCAATGTGAAGCTAGTTTCCAAGAGCTTAAGACAAGACTGACCACCCCTCTTGTTTTAATTATTCTAGACCCCACAGGACATTTTGAAGTGTATAGTGATGCTTCAAAGAAAGGGTTAGGATGTGTGCTAATGCAAGATAAGAGAGTAGTTGCTTACGCCTCTAGGCAACTGAGACCCCACGAAGGAAACTATCCAACCCATGATCTTGAATTAGCGGCAGTAGTGTTTGCCTTAAAGATTTGGCGACACTATTTATGGGTAGAATTCCTCAATGACTACAAGTTTGAGATAAAGTATCATCCCGGAAAGGTGAATGTTGTAGCAGATGCCTTGAGTCGAAAATCTCTGCACATGGGTCAGATGATGGTGTATGAGATGCAGATGCTAGAGGAGTTTCGAAATTTGAAGCTAGCCACTACTCTTACTCCAAAGAATCTAGTCATTAATGGTTTAAGTATAGGGTGTGACCTTAGAGCCCAGATCAAAGAGACTCAAGCTCACGACCAATACTTACAGGATCATAAAGACCAAGGTAATTTTTCTGTCATGGAAGATGGAGCAATCATATATCAGGGAAGGATTTGTGTCCCTCAAGAACGAGAGTTGAGGACTAAGATCCTACAGGAAGTACATCAAAGAAAATACACAGTCCATCTTGGATGCACTAAAATGTACCAGGATTTAAAAAGGATGTATTGGTGGCCAAGGATGAAAAAGGACATTGCCGAGTTTGTGGCGAAATGTCTCATTTGTCAAAAGGTGAAGGTGGAGCATCAAAAGCCAGCGGGATTTCTACTACCTCTTGAGATCCCTAAATGGAAATGGGACAGTATCTCGATGGACTTTGTTGTGGGTTTACTTAAGACTTCAGTGGGACATGACTCTATCTGGGAAGCATTTGGTACTCAGTTGTGGTTCAGTACTGCCTACCATCCTCAGACTGACGGGAAGACAAAACGAACCATTCAAACCCTAGAAGATATGTTAAGGGCCTGTGTGATAGAGCAAGGTAAAGGATGGGATAAGTACCTACCTTTAGTAGAGTTTGCTTATAATAATAGTTATCACTCCAGTATTAAGATGGCCCCCTATGAAGCTTTATACGGTAGAAAGTGCCAATCTCCACTATGTTGGTTTGAGGTAGGAGAAAAGAACTTGTTGGGTCCTGATCTAATTCAACAAACCACTGAACAAATCAGGATGATACGAGATAAAATACTCACAGCTCAAAGTCGGCAAAAGAGTTACTATGATAAGAGACATAGACCTCTGGAGTTTGAGGAAGGGGAACATCTGCAGAAGTATCTTCCAGATTCATCACATGTAATACAGGATGAACCAATCCAGATAAAGGAGAACATGACATATCAGCTAGTACCTGCATCCATATTGGACACTAACATGAAGCAACTGAGAAATAAAATCATTCCCCTTGTTAAGGTGTTATGGGAAAGTTTGACTCCGGAAGAAGCAACTTGGGAGCTGGAAGAATTCATGAGGAAGAAATATCCGCAATTGTTCTTATTAGGAGAACTTAACAAGAAGTTACACTGCTTGTTTCCAAGGAGGAGCGACACTGTGACAGGACCTGTGCAACTCTTTATACTCTATGACGAAAAGCAAAGTGAAACTATGAGCAGCAGCAGCAGCAACATCAACAACTTCGCTGCTTCGCCGGAGGCTCGGCGCTCTGGTTTTAGAGCCTCTGATCGCCGTTCTCCAAATAATAGTGACTACCATGAGGTGCCAGTGTTTTACCGATCACGTTCTGTCCAAGCCACTCCTGATGAAAGGGCATCAAGTGCACTGAATCGTTGGAGGTTTCCGGAGGATACAGGACACTACGGCATACCAAGTTTTGCAGCACAACGACATAGCATCTTTCTTCCAAGATCCACCACACGCCAAACAAACGAGCAAGTTCATACAAGGGTGGATGAAAATTCCAGATCAAGAGCCATGAGCAAGCTGAAGAAAGAGGTCTACAACCCCACCCCTAAGCTATTGGCAAGGAAAGTGAGCTTATATTACAGAGACGTTAATGGTGGAAATGCTTTGGAATCTAAAGAGAGAGAAAAGAAAAAGGAAAAGGAAGAAGAAGGGAAGAGTTCCTGTGCTGTGTGCTTGGAAGATTTTGAAGCAAAACAAGAGGTGATGGTGACCCCTTGCAAGCACTTGTTTCATGAAGATTGTATAGTGCCATGGCTGGCAAACCAAGGTCAGTGTCCAATATGCAGGCTTGTGATTTGTGAGAGGCCATCATCATCCTTCAACAACAATAACGACAATGTTAATGTGGCACCCAGTGACCTAATTGTAGGAGAGCTTTTATCTATTTTGAGCGCCGTGGAAGAAGCTTTTCATTTGAGAAATGAAACTCGCTGA 2691 0.4266 MTLLDQLKGASIFSKIDLRSGYHHIRIKEEDVLKTAFRTSGVAVDPNKTEAVIQWERPKTVTEVRSFLGLAGYYRRFIQNFSRIALPLTKLTRKGSPFTWTDQCEASFQELKTRLTTPLVLIILDPTGHFEVYSDASKKGLGCVLMQDKRVVAYASRQLRPHEGNYPTHDLELAAVVFALKIWRHYLWVEFLNDYKFEIKYHPGKVNVVADALSRKSLHMGQMMVYEMQMLEEFRNLKLATTLTPKNLVINGLSIGCDLRAQIKETQAHDQYLQDHKDQGNFSVMEDGAIIYQGRICVPQERELRTKILQEVHQRKYTVHLGCTKMYQDLKRMYWWPRMKKDIAEFVAKCLICQKVKVEHQKPAGFLLPLEIPKWKWDSISMDFVVGLLKTSVGHDSIWEAFGTQLWFSTAYHPQTDGKTKRTIQTLEDMLRACVIEQGKGWDKYLPLVEFAYNNSYHSSIKMAPYEALYGRKCQSPLCWFEVGEKNLLGPDLIQQTTEQIRMIRDKILTAQSRQKSYYDKRHRPLEFEEGEHLQKYLPDSSHVIQDEPIQIKENMTYQLVPASILDTNMKQLRNKIIPLVKVLWESLTPEEATWELEEFMRKKYPQLFLLGELNKKLHCLFPRRSDTVTGPVQLFILYDEKQSETMSSSSSNINNFAASPEARRSGFRASDRRSPNNSDYHEVPVFYRSRSVQATPDERASSALNRWRFPEDTGHYGIPSFAAQRHSIFLPRSTTRQTNEQVHTRVDENSRSRAMSKLKKEVYNPTPKLLARKVSLYYRDVNGGNALESKEREKKKEKEEEGKSSCAVCLEDFEAKQEVMVTPCKHLFHEDCIVPWLANQGQCPICRLVICERPSSSFNNNNDNVNVAPSDLIVGELLSILSAVEEAFHLRNETR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0959 896 SMART ring_2 807 847 IPR001841 -
Glsi04g0959 896 Pfam Ring finger domain 806 848 IPR001841 -
Glsi04g0959 896 MobiDBLite consensus disorder prediction 649 681 - -
Glsi04g0959 896 FunFam Transposon Tf2-6 polyprotein-like Protein 47 136 - -
Glsi04g0959 896 SUPERFAMILY RING/U-box 798 854 - -
Glsi04g0959 896 Gene3D - 391 512 IPR036397 GO:0003676
Glsi04g0959 896 Gene3D - 265 357 - -
Glsi04g0959 896 ProSiteProfiles Zinc finger RING-type profile. 807 848 IPR001841 -
Glsi04g0959 896 Gene3D - 47 140 IPR043128 -
Glsi04g0959 896 ProSiteProfiles Integrase catalytic domain profile. 379 473 IPR001584 GO:0015074
Glsi04g0959 896 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 399 495 - -
Glsi04g0959 896 CDD RNase_HI_RT_Ty3 131 216 - -
Glsi04g0959 896 CDD RING-H2_PA-TM-RING 807 848 - -
Glsi04g0959 896 Pfam RNase H-like domain found in reverse transcriptase 100 188 IPR041577 -
Glsi04g0959 896 SUPERFAMILY DNA/RNA polymerases 3 201 IPR043502 -
Glsi04g0959 896 FunFam Retrovirus-related Pol polyprotein from transposon gypsy-like Protein 283 356 - -
Glsi04g0959 896 Pfam Integrase zinc binding domain 302 358 IPR041588 -
Glsi04g0959 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 785 852 IPR013083 -
Glsi04g0959 896 SUPERFAMILY Ribonuclease H-like 371 469 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0959 Glsi-ChrGlsi04 7808791 7820975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0959 750 896 C3H Transcription Factor Family AT3G58720 46.711 2.32e-35 133