Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0957 ATGGCAAAAGCAAATGCGAAGGAGAAATCCACTTCCACTGCCCTCCACCCTCCTTACTTCCATATGATAGCGGATGCCTTGTCTACATTGAATGAACGCACGGGATCAAGCCAACAAGCAATAGCCAAATTCATTGAGGACAAACACGGGAAAGTGCTGCCCCCTAATTTCAGGACATTGCTCTCTGTTCAACTGAAGAAGTTCGTCAAATCGGAGAGGTTGTTCAAGGTGAAGAATTCCTTCAAGATCTCTCCCGCGGAGAAGCTGAAATTGGCAGTCGAGAAAAACAAAACTACCGAACCCTCCAACAAGAGTGCCAAGAAGGTCACAGAGAAAGGGATGAAGAACAAGAGGCTGAGTCACGTGAAGACGCCGGAGGTTCTCAAGAAGGTCGTCAAGGATGCTAAGAAGAAGCTGGTAACATCCTCATCAGGGAAAGTCAAGCGTCTGAGTCAGGTTAAGACCCCTGAAGCAATGAAGAAGAAGAAGAAGACTACTTCGAAACCCATGAATTCTTCCAGGCCTGCAAAGAAGGCTAGGAAATAG 546 0.4689 MAKANAKEKSTSTALHPPYFHMIADALSTLNERTGSSQQAIAKFIEDKHGKVLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISPAEKLKLAVEKNKTTEPSNKSAKKVTEKGMKNKRLSHVKTPEVLKKVVKDAKKKLVTSSSGKVKRLSQVKTPEAMKKKKKTTSKPMNSSRPAKKARK 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0957 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi04g0957 181 MobiDBLite consensus disorder prediction 94 181 - -
Glsi04g0957 181 Gene3D - 10 108 IPR036388 -
Glsi04g0957 181 PRINTS Histone H5 signature 159 178 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi04g0957 181 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi04g0957 181 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi04g0957 181 PANTHER HISTONE H1 7 165 - -
Glsi04g0957 181 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi04g0957 181 MobiDBLite consensus disorder prediction 94 141 - -
Glsi04g0957 181 CDD H15 16 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi04g0957 181 SUPERFAMILY "Winged helix" DNA-binding domain 13 95 IPR036390 -
Glsi04g0957 181 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0957 Glsi-ChrGlsi04 7741879 7742505 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0957 17 99 Single Myb Histone (SMH) Gene Family AT1G72740 38.554 6.69e-11 57.8