Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0947 ATGGATGAATTATTGGTTGCTATACTGTCGATGCTTCTCGTGGTGGCATTGATTCCATTATATCTCTGGAAACGACGTCAGGATTCTCGATCACCAGGTTTCCAACATGAAGAGCCTCGGAGGGAAGTTGTGGTACGCGCCACTGGCACTTCATCAGCTGCAGCGGCAACGATTGAAGAATCTGTCGAGCAAAGTGACGATGAAGCTGCTGCTGGTGAGCATTATGAGCATCAAAGAAAAAAGAAAAGAAACGGCAAGAGAGGGAAGATCGACGATGGATGCTGCGTAAGAGTTGAGGCAGACAGAACAAGACCATTATGCAGAGATGCGGATGAAGAGCGTGAGGTGCTGGAGCGTAGGCTGGAAGAGGAAGCCGAAGCTCAGAAGGCCAGGGAGGAGGAAGCTGCTGCATTAGAGTTTGAGAAGTGGAAAGGTGAATTTTCAGCAGATGATGAAGGTACTTTGGAAGAAGTACAAGATGGTAATCAAGACCTGCTAGCAAATTTTGTTGAATATATAAAGGATCGGATCAATCGCATCACGTCCCTGGAAAGTATTGGGAGGCTTTCTGGTGTCGTGGATGATAGAGGAAAATATATTTACATCTCACAAGAGATGAAAGCTGTTGCTGATTTTGTTAAGCGGCAAGGGAGGATTAGCATTTCCCACCTAGCAAGAAAATCATGCAAATTGCATCATACAAAGGTGGACATCATCTTCATTCCATATTACTTTTGTAGGCAAGCTTTGGCATATAGCTGCAGTCGCGGTGAATTGGGCACGGGTACCCAGCCTTCTTGGCAAGGGGCTCAATTTATTCAGCTGTTTGGCAAGAAAAATGTTGGTGTGAGCATTACTATGAAGAAACTTAAGAGTTCAGAAACTGGTGGGGCATCTAAAGGAGAGATGAAAGTTGCTTGGAAGGCTTCCTCGTCCTTCCGGCGTACGTTGTTTTTTATATTATTCGTGTTTCTGTGTGTTTCCGAGGTTTGTTACGGGCAAGACTACGAGGAAGAGAAGCCTAAGAAGAAGCCTAAGCTGAAGGAGCTTGACACGTGCAATGGCATCTTCTTGACGTACACCTTCCAAGGGCGCACCAAGGAATTCCCGCACTTCAAGAATGTGACGAAGCAAGCATGGGCGTTTAAGGCGGAGGCCTCGTTGACAAATGTCGGCGAAGACGAACTGAAGGGTTGGCAGATGTACGTGGGGTTCCAGCACCGGGAGATCTTGGTCACATCCACCGGTGCCGTCCTCATTGACGGCGGGGACTTCCCGTGGCCGGTGGGAAACGGGACTACTTTTGCAGGGAATACCGTAATGGACTTGAAAACCGCCATCGATACTGCTGGGGATTTTGATCAAATGTCCGCTAGGATTGAGATGACGGGCACCCAGTTTGGCCTAAAAGCGGGAACCAATCCAATGCCCAAGAAAATCAAGCTTGTCAACGACGGGTACAAGTGTCCCGCATCAACACGACGTGGGACGACGATGTTTGTGTGCTGCACAAAGGACCCCAAGGCCAAGGTGACGAAGGGGAAGACCAAGTACCCTCCTCGTCGTAACGGAGACGTAACAATCGCGTACGATGTACTTCAAGCCAACAAGAACAACTACTACGCCCAGGTCACCATCGACAACAACAACCCTCTTGGTCGTCTCGACCACTGGAACCTAACTTGGGAATGGCAAGGCGGCGAGTTCATCAACAGTATGAAAGGCGCTTTTACCCACAAACGCGACACCACCACGTGCCTCTTCGGCCCTGCCGGAAAATTCTACGGCGACTTCGACTTCTCCCAAGCCGTCAGCTGCGAGAAAAAGCCCGTCCTCTCCGACCTCCCACCTCAAATGAAAGAAGACGAGAAGGTCGGAAAACTCCCCGGATGCTGCAGAAACGGCAGCGTTTTACCCCCCACAATGGACCCGAACAAAGCCAGATCCATGTTCCAATTAAGTGTCTTCAAAATGCCACCTGATAATAACCTCCGTACCGCCTTAACTCCACCTGTCAATTGGAAAATCGACGGCGTTCTTAACCCACAGTACAAATGCGGGCCCCCAATTCGTGTGGACCCAGCTGAATTCCCAGACCCAAGTGGGATCAGCGACTCCGTTAGTTTGGCCATTGCCAGCTGGCAGGTAGTCTGCAATATAACCAAACCCAAGCCCAAGCAAAACCGCTGCTGTGTCTCCTTCTCAGCTTTTTACAACGAATCAGTGATCCCTTGTAACACCTGCGCTTGTGGTGGGTGCGAAGACACCAAATCATGCGACCCCGTGGCCCCTGCCTTGCTTCTTCCATCCCAAGCCCTTCTGGTTCCTTTCGAGAACAGAACCGACAAGGCCCGGGCTTGGGCCAATCTGAAGCACTTTAAGGTGCCCAAGAAGCTTCCATGTGGGGATAACTGCCCCGTGAGTATAAACTGGCATATAAACTCAGATAGCAAAGGTGGATGGACGGCTAGAATGACTATTTTCAACTGGAAAGAGTATAACTTCGATGACTGGTTCGCTGCGGTGTCGTTTAAAAGGGTTTATAATAATTACGAAAATGTGTACTCCTTTAATGGCACCAAGATTGATGACCTCAGCACCATCTTCTTCCAAGGGTTGAAAGATATGAACTATTTGGTTGGACAGACGAATGGGTCGAAGCCGTATGATCCTAAAGTTCCTGGGAAGCAGCAGAGCGTGATCTCATTTAATAAGAAGAACATTAATAATTTTGATATTAGAAAAGATGGGTTTCCCTCCAAGGTTTATTTTAATGGAGAAGAGTGTGCTCTTCCTACACATACTCCCATCCAGGGCTCTTCAGGAAACCTTCAAGCTTCTATGCTTGCTGTCATAGTCATGGCCTTTGTGACCTTCTTGCTCATGGCAGATCATTCCTTTTACTGA 2907 0.4847 MDELLVAILSMLLVVALIPLYLWKRRQDSRSPGFQHEEPRREVVVRATGTSSAAAATIEESVEQSDDEAAAGEHYEHQRKKKRNGKRGKIDDGCCVRVEADRTRPLCRDADEEREVLERRLEEEAEAQKAREEEAAALEFEKWKGEFSADDEGTLEEVQDGNQDLLANFVEYIKDRINRITSLESIGRLSGVVDDRGKYIYISQEMKAVADFVKRQGRISISHLARKSCKLHHTKVDIIFIPYYFCRQALAYSCSRGELGTGTQPSWQGAQFIQLFGKKNVGVSITMKKLKSSETGGASKGEMKVAWKASSSFRRTLFFILFVFLCVSEVCYGQDYEEEKPKKKPKLKELDTCNGIFLTYTFQGRTKEFPHFKNVTKQAWAFKAEASLTNVGEDELKGWQMYVGFQHREILVTSTGAVLIDGGDFPWPVGNGTTFAGNTVMDLKTAIDTAGDFDQMSARIEMTGTQFGLKAGTNPMPKKIKLVNDGYKCPASTRRGTTMFVCCTKDPKAKVTKGKTKYPPRRNGDVTIAYDVLQANKNNYYAQVTIDNNNPLGRLDHWNLTWEWQGGEFINSMKGAFTHKRDTTTCLFGPAGKFYGDFDFSQAVSCEKKPVLSDLPPQMKEDEKVGKLPGCCRNGSVLPPTMDPNKARSMFQLSVFKMPPDNNLRTALTPPVNWKIDGVLNPQYKCGPPIRVDPAEFPDPSGISDSVSLAIASWQVVCNITKPKPKQNRCCVSFSAFYNESVIPCNTCACGGCEDTKSCDPVAPALLLPSQALLVPFENRTDKARAWANLKHFKVPKKLPCGDNCPVSINWHINSDSKGGWTARMTIFNWKEYNFDDWFAAVSFKRVYNNYENVYSFNGTKIDDLSTIFFQGLKDMNYLVGQTNGSKPYDPKVPGKQQSVISFNKKNINNFDIRKDGFPSKVYFNGEECALPTHTPIQGSSGNLQASMLAVIVMAFVTFLLMADHSFY 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0947 968 Coils Coil 107 138 - -
Glsi04g0947 968 SMART DDRGK_2 69 233 IPR019153 -
Glsi04g0947 968 SUPERFAMILY "Winged helix" DNA-binding domain 160 205 IPR036390 -
Glsi04g0947 968 PANTHER COBRA-LIKE PROTEIN 7 316 962 - -
Glsi04g0947 968 MobiDBLite consensus disorder prediction 52 89 - -
Glsi04g0947 968 Pfam DDRGK domain 73 230 IPR019153 -
Glsi04g0947 968 Gene3D - 164 202 IPR036388 -
Glsi04g0947 968 Pfam COBRA-like protein 540 721 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0947 Glsi-ChrGlsi04 7566599 7577854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0947 300 964 COBRA Gene Family AT3G20580 58.012 0.0 785