Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0940 ATGCGCGCCACCAACGTTAAAAGCCTGTGCAGGCTGAGTGCTCTGTTCCGTTCAGCCCTCAAACCCAATACTTTGGAATTTGAATCTTCTTCTCTAGGCCCACCTATTTTGGAAGATGATAGTTCGGTTCACAAATGTGAACCTACGCTTTCAGCCCTCAAATACTCTGGTGCAGAAAATTCGCCTAATCAGGTATCTATGCAGATTTCCTCTATATTGTGCAATGGTCGAGGTGTCAAGAGACCTGATGGTGACATAGAAAAATTGGAAAGGGCAATAGATATACCATGGTTTTCAAGAACATTTCATGGTAATATAGCACAGCGACATAAAGAGGTATCTCGTGAGAGAAAGCAAAAATGGATTACTAAAAGTTCACATGGAATCCGTTTTGAAAGGGTAGTGAAAATGTGTGCAGAAAAACTAGGCACAGAGGCTACCATTGAGGTGTTTGATAAATTGGGGAAAGAAACAGGTATAAAAGAATATAATGCATTATTAGGCATATGCGTAAATAAAGCTAGGGAAGCTGTTGATGAAGAAGTTGCAATACAAGAAATGGGCAAGGCCTTTTACATTTTTAGAGTAATGAGAGAACAAGGTTATCAACTACAAGAGCAAACCTATCGCCCTCTTCTTGTGTATTTGATTGATATGGGTATGGTTGAAGAATTTCAATTTTTCAGTGATGTTATTAAAGACAAGAATCCCAGTTCAGTTTCGAGATTGCATTACTATGAAATGATGCTATGGCTAAGAGTTAATAATGAAGAAAAGATTCGAGATCTTTTTAACTATATTGTGGTCAATGATGGTGAACACACTTCTAATTTACGAGAAAGTTATTTATTGGCATTTTGTGAAAGTGATCGGAAGGAGGAGCTTTTGCAGCTGTTGGAAATTATAGACATGACAAAGCTATCATCTACAGAATCTGTAGAAAATGTATTTAAATCATTAGGAAGGCTGCTTTTGGAATCAGTAGCTGAAAAGTTCCTTTTGGCTTTCAAAACATGTGATCATGAAGCAGATAATATTACAAACTTCATTGCTAGTTATGCTGTTAGCATACCAAATTTAGTGGTTGACGATGTCATCTTGAGATTCAAGGATTTGCACCACAAACTGAAGGTTTCACCTTCGTCCTCATCATATGAGAAGCTTATTTCATATTGCTGTGACTTACATGAGGTTCATATAGCTCTTAATATTGTTGATGAAATGTGTGAAGCAGGCCTTACCTTATCAACTGAGCTGTTAAACTCCATATTACGTATTTGTGAGGAAACCTGCGAATATAATTTGGTCCATCGGATCTATTTTATGATATGGAACTACAATTTGAAGTCAAATGTTGATACATTCTGGTGTATGATAAACTTGTGCGTGAGGATGAAAGATTTTGAAAGTGCATATAAGATGCTTGATGATTTGGAACAAATAAATTTGAAGCCTACGGCAAACATGTACAATGCTATAATGGCGGGATATTTCAGAGAGAAAAACATTAGTGGTGCATTGAGGGTCCTGAAGCAAATGGAAGGTGCCAATGTCAAACCTGATTCACATACTTTTAGCTATTTGATCAGCAATTCTAAAACTGCAGAGGATATAGCCAAGTATTATGAAGAACTGAAGGAATCTGGTAACCAAGCAACTAAGCAAGTTTTCATCGCCCTTATAAATGCATATGTAGCTTGTGGGCAGTTGGAGAAGGCAAAACAGGTAGTCTCAGATCCAAACATTCCACCTAAGAGCTTAAATGAAATTAAGAGTGTCCTTGTCTCAGCTCTTGCATCACATGGGCAATTGTCTGAGTCTAGTCTTATCCATGAGGAAATAAAAAATGCCGGACACAATTTAGAGCCAAAAGCTGTTATAAATCTTATTGAGGAGCATGCTCAATATGCAGAGTTGGATAGGTCGCTTCTGCTACTTAAGGAATTGAGTGATCCAGACTATTGGATTGATGGTTGCTTTAGAATTATCACGTACTGTGTTCGGAACAAGAGTTTAAGTTCTGCTGTGGATTTGATTAAGCAACTCAAGGATAAATTCCACAGTGATGAACTGCTGATGGAAACACTTTTAGATCAGGTGTTCTCTGTTTCAGCATCAGAGTCCACTTACTTGGAATTTGGTCTGGACCTTTTTTGGGTAATTAGAAAAGAGCTTGGTGTTTTGCCTTCTCGACAATGTCTTGATTTTCTTCTAAGTGCTTGTGCCAACGCCAAAGATTTGCGTAGTGCTCGTTTGATTTGGAAAGAATACAAGGTGGTCGGATATCCATACAATGTTTTAAGTTCCTTGAGGATGTACCAGGCGCTTATGGCATCGGGAGACCATAGATCTGCCAACTTTGTGTTTGAGAAAATTTCAAAAGATGATCCCCATGTTTGTGCTGTCATCAAAGCATGTCAAAGAACTTACCATGATCTTGCCTCTGTAGAAATTACAAAGAAAAAGAAAACCAAAAAGAAAGAAAAGAAGCTTAAATAG 2499 0.3778 MRATNVKSLCRLSALFRSALKPNTLEFESSSLGPPILEDDSSVHKCEPTLSALKYSGAENSPNQVSMQISSILCNGRGVKRPDGDIEKLERAIDIPWFSRTFHGNIAQRHKEVSRERKQKWITKSSHGIRFERVVKMCAEKLGTEATIEVFDKLGKETGIKEYNALLGICVNKAREAVDEEVAIQEMGKAFYIFRVMREQGYQLQEQTYRPLLVYLIDMGMVEEFQFFSDVIKDKNPSSVSRLHYYEMMLWLRVNNEEKIRDLFNYIVVNDGEHTSNLRESYLLAFCESDRKEELLQLLEIIDMTKLSSTESVENVFKSLGRLLLESVAEKFLLAFKTCDHEADNITNFIASYAVSIPNLVVDDVILRFKDLHHKLKVSPSSSSYEKLISYCCDLHEVHIALNIVDEMCEAGLTLSTELLNSILRICEETCEYNLVHRIYFMIWNYNLKSNVDTFWCMINLCVRMKDFESAYKMLDDLEQINLKPTANMYNAIMAGYFREKNISGALRVLKQMEGANVKPDSHTFSYLISNSKTAEDIAKYYEELKESGNQATKQVFIALINAYVACGQLEKAKQVVSDPNIPPKSLNEIKSVLVSALASHGQLSESSLIHEEIKNAGHNLEPKAVINLIEEHAQYAELDRSLLLLKELSDPDYWIDGCFRIITYCVRNKSLSSAVDLIKQLKDKFHSDELLMETLLDQVFSVSASESTYLEFGLDLFWVIRKELGVLPSRQCLDFLLSACANAKDLRSARLIWKEYKVVGYPYNVLSSLRMYQALMASGDHRSANFVFEKISKDDPHVCAVIKACQRTYHDLASVEITKKKKTKKKEKKLK 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0940 832 NCBIfam pentatricopeptide repeat 489 522 IPR002885 -
Glsi04g0940 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Glsi04g0940 832 Gene3D Tetratricopeptide repeat domain 414 556 IPR011990 GO:0005515
Glsi04g0940 832 Gene3D Tetratricopeptide repeat domain 128 333 IPR011990 GO:0005515
Glsi04g0940 832 Pfam PPR repeat 559 577 IPR002885 -
Glsi04g0940 832 Gene3D Tetratricopeptide repeat domain 660 832 IPR011990 GO:0005515
Glsi04g0940 832 PANTHER OS02G0132600 PROTEIN 9 827 - -
Glsi04g0940 832 Pfam Pentacotripeptide-repeat region of PRORP 381 547 IPR033443 -
Glsi04g0940 832 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 451 485 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0940 Glsi-ChrGlsi04 7499446 7513397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0940 350 795 Glycosyltransferase AT1G05670 19.207 1.52e-13 72.8