Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0932 ATGGTTTCCCCGGAGAACTCCAATTGGTTTTACGATTATGGCTTGATTGACGACATAGCCGTCCCAGATGGGAGTTTCACTGTCCCTGCTCCTGGGTTCAGCTGGCCGGCGCAGGCCGTGAACGGTTCTTCGAATGTCAGTGTTGAAATTGATGGTTCATTGGGGGATTCTGATGGCCTCAAAGAGTCTGGTTTGAAGAAGAGGAGTAGATCTGATTCATGTGCTGCTTCTAGCTCCAAGGCATGTCGGGAGAAGTTGCGGCGGGATAGGCTGAATGACAAGTTTCTTGAATTAAGCTCCATTTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCTGTTTTGATTGATGCTGTCCGAATGGTGACACAGTTACGCGGTGAAGCCCAGAAGTTGAAAGACTCAAATACAAGTCTTCAGGATAAGATAAAAGAATTAAAGGCTGAGAAGAATGAACTTCGTGACGAGAAACAGAGGCTCAAGGTAGAGAAAGAAAAGTTGGAGCAGCAGCTGAAAACTATCAATGTACAACCTGGTTTCTTGCCTCCCCCACCTGCAATTCCAGCTGCATTTGCTGCACAAGGCCAAGCCCCTGGCAACAAGTTGGTGCCTTTTATTGGTTATCCAGGAGTTGCCATGTGGCAATTTATGCCACCAGCTGCAGTGGATACCTCGCAGGATCATGTACTCCGTCCTCCGGTTGCCTAA 711 0.4852 MVSPENSNWFYDYGLIDDIAVPDGSFTVPAPGFSWPAQAVNGSSNVSVEIDGSLGDSDGLKESGLKKRSRSDSCAASSSKACREKLRRDRLNDKFLELSSILEPGRPPKTDKAAVLIDAVRMVTQLRGEAQKLKDSNTSLQDKIKELKAEKNELRDEKQRLKVEKEKLEQQLKTINVQPGFLPPPPAIPAAFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0932 236 FunFam Transcription factor bHLH34 66 124 - -
Glsi04g0932 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 144 IPR036638 GO:0046983
Glsi04g0932 236 Pfam Helix-loop-helix DNA-binding domain 79 126 IPR011598 GO:0046983
Glsi04g0932 236 Gene3D - 76 152 IPR036638 GO:0046983
Glsi04g0932 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 126 IPR011598 GO:0046983
Glsi04g0932 236 SMART finulus 81 132 IPR011598 GO:0046983
Glsi04g0932 236 CDD bHLH_AtILR3_like 80 155 - -
Glsi04g0932 236 Coils Coil 123 178 - -
Glsi04g0932 236 PANTHER BHLH TRANSCRIPTION FACTOR 4 236 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0932 Glsi-ChrGlsi04 7426048 7428624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0932 1 236 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 74.477 3.24e-122 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi04g0932 HLH 1.6e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi14g1175 14 12919651 12922622 Glsi04g0932 04 7426048 7428624 CCT
Glsi04g0932 04 7426048 7428624 Glsi04g0932 04 7426048 7428624 ECH