LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g0928	ATGATGGATTTTACAAAGGCTAGCTTTTGCGTTCTTTTGGTTCTTCTTACAACAGCAGTCAGCTTAAAAGATACCGAGGACAAACAGGAAGACTTCCTTAGCCAACTACTCGATCCTGCATCTGGATTGTTGGATGAGGACACGGCAAAGCTATTATGGACCATTTGCTCCATAAATTTAATTCATTTGAAGGAAGAGGTTGGATATATTGACTTATGCTTCCAACAGGAATCATCCAGTTGCATCAATGAAATTAGTTCAGAGGCTCAATCATTAGCAAGAGAAAACATCCAAAAATTGATTAATGATTGCCATCCTCAGTTGAAGCAACTTTTTCTTCACTGTTTGAGAAAAAATAATCATCCACTCCGTGTCTTTAGAGATGAGGATGACTCCAATGTTTGGCATGCCACTTATATCAAATCGCTTTTTGCCAGATCCAATGTTCCTAGAAGAAATCTGGGCCGTCGTTTGCCTGAGCGCAAATTAAAAGTAACCAATACTGTGCCTGCGGTTAAATCATCTCTGCTTCCTGCTTCTTCACCAAAAAAGGACACTAAGTCACAGTCTCCAACCACTAAAAAAGCTTCTTCTAATGCTAAAGGAAGTGCAAAAAAGAAAAAGGATGACAAAAAAACACTTGTTATAGTTATAGCTGCAGTGGTGACATTTGTAGTTGCACTACTGCTCTCTATATGTTGCTGCTGTTGTTGTAGGTGTTGTAGGAAAAGCCGAGCTAAAAAAAATGATGAGAGGCCTCTTCTCAGCATGAGTGACTACTCTGTTGGTTCTTCCAATTCTGCTCGTGGAAATTCAACAAGAGGTGAGAAATTTAATAATTTGGCTGACCACAAAAATATCTCATCTCTGAATGGCAATTTTTCTGTTGGATCTGATGTTCCTGAAAGTCAATCCCCCGGAGCTGCTGCCAGATCATCGTTTGACCTGAAACCTCCTCCTGGTAGGGTGGCAACCATTGCTGCTCAATTGTCTCCTTTGAAACCTCCCCCTGGCAGGCCTAATGTCCTTCCCCCTCAGCCACATTCTGGTAATGCTGCTGCTGCTCCTCCTCCTCCTCCACCTCCTGCACCGCCACAGCCTGGAAAACCTCATACTGGACCTCCTCCTCCACCACCCCCAGCACCACCTGGTGCCAAAGCAGGTGCTCGTGCACCACCACCTCCTAAGGGTGGTCTAGCTCCTCCTCGACCTCCTCCACCAATTGGTGCAAAGGTTGCTCGGCCTTTAGCTATATCAAAACTAAAAGCTCCAGAAGGTGATGCTGATTCAGAGGGTGATGCTGACGCTCCTAAAGCCAAGCTGAAACCTTTTTTCTGGGATAAGGTTCAAGCTAACTCAGATCAATCAATGGTTTGGAATCAGATTAAATCGGGATCATTCCAGTTTGATGAAGAGATGATGGAGACGCTTTTTGGCTATAGCTCAGTGGATAAAACCAAAGTTGAGCACAAGAAAAAATCTTCATCCCTAGACCCTGCACCTCAGTATATCCAGATCATTGAAGCGAAGAAATCGCAAAATTTGTCAATTCTATTGAAAGCATTGAATGTGACTATGGAAGAAGTTTGTGATGCACTTCATGAAGGAAATGAGCTTCCCTCAGAATTCATTCAAACCTTGCTGAAGATGGCACCAACACCCGATGAAGAACTCAAGCTTAGACTTTTTAATGGTAAATTATCTCAACTTGGACCTGCTGACCGGTTCCTAAAAGCCCTTGTTGAAATTCCAATTGCTTTCAAACGACTGGAAGCACTGCTTTTCATGGGTACTCTAAAAGAGGAGCTCACCTCTACTAAGGAGTCATTTGCAATTTTAGAGGTTGCTAGTAAGGAACTAAGAAGCAGCCGGCTGTTCCTCAAGCTTCTAGAAGCTGTTCTTAAAACTGGCAACCGTATGAATGATGGAACATTCCGTGGTGGTGCACATGCATTCAAGCTCGATACACTCCTTAAATTGTCTGATGTAAAAGGAATCGATGGCAAGACTACACTCTTACATTTTGTTGTTAAAGAGATAATCCGCTCTGAGGGCATAAGAGCAGCTCGCATATCTAAAGAGAGCCGGAGTTTCTCTAGTATTATGACAGATGACCTTCTTGAGGACATCTCCATTGAAACAGAAGAACGCTATCATGAGCTTGGTCTTCAGGTGGTTTCACATTTGAGCAGTGAACTTGAGAATGTCAAGAAAGCAGCAGCTCTAGATGCTGACAGCTTAACAGGAACTACTGCCAAACTCGGTCATGGTCTCATGAAAACCAGAGACTTACTAAAGAGAGACCTGGAAAGCCAAGAGGCAGACAGAGGGTTTTATCATACGGTGGAGAGTTTCGTACAGAATGCTGAGGATGATGTCACAAATCTGCTGGAAGAAGAGAAGAAAATCATGGATCTGGTGAAGAGCACTGGTGACTACTTTCATGGGAACACTGGGAGGGATGAGGGCCTTCGGTTGTTTATAATAGTACGGGACTTCTTAATAATGTTGGATAAGGTATGCAAGGAGGTGGGAGATGCACAGAAGAAGGCAGCAAGAACTCCGAAACAAGAGACTGCTCCTAGATCATCTATCTCTGATCTTCGTCCCCCGCCTTCTCCAGATCATCGGAAGCAGCTTTTTCCAGCAATCATAGAAAGGAGGACAGATGACTTTAGTTCAGATGATGAGAAGGAACGAATGCTTACTTTTGTTTCTTCTCTTAAAGGTGGAAGTGGCATGCTGGTTACCAACACTTGTCAAAGTAAAATGGCAAATGATAAACCTGATACACAAGTAACAGGCAGAATAAAGCACCCTAAGCCTAAGGGTGACCAAACCCCTATTAATCCTCCAATAAACCTTCAGACGAGAAAGACACAGAATCTGGTTGAAAGGAATTCGAGGAGTTTTGGAAACTCTACTGGGGAAAGGATATTCGAGTGTGGTTCTAAGACTGGAAGCGAGAAGCAGTTGGAGTTTGCAACCATGGAAGTGTATTGTTAG	3006	0.4331	MMDFTKASFCVLLVLLTTAVSLKDTEDKQEDFLSQLLDPASGLLDEDTAKLLWTICSINLIHLKEEVGYIDLCFQQESSSCINEISSEAQSLARENIQKLINDCHPQLKQLFLHCLRKNNHPLRVFRDEDDSNVWHATYIKSLFARSNVPRRNLGRRLPERKLKVTNTVPAVKSSLLPASSPKKDTKSQSPTTKKASSNAKGSAKKKKDDKKTLVIVIAAVVTFVVALLLSICCCCCCRCCRKSRAKKNDERPLLSMSDYSVGSSNSARGNSTRGEKFNNLADHKNISSLNGNFSVGSDVPESQSPGAAARSSFDLKPPPGRVATIAAQLSPLKPPPGRPNVLPPQPHSGNAAAAPPPPPPPAPPQPGKPHTGPPPPPPPAPPGAKAGARAPPPPKGGLAPPRPPPPIGAKVARPLAISKLKAPEGDADSEGDADAPKAKLKPFFWDKVQANSDQSMVWNQIKSGSFQFDEEMMETLFGYSSVDKTKVEHKKKSSSLDPAPQYIQIIEAKKSQNLSILLKALNVTMEEVCDALHEGNELPSEFIQTLLKMAPTPDEELKLRLFNGKLSQLGPADRFLKALVEIPIAFKRLEALLFMGTLKEELTSTKESFAILEVASKELRSSRLFLKLLEAVLKTGNRMNDGTFRGGAHAFKLDTLLKLSDVKGIDGKTTLLHFVVKEIIRSEGIRAARISKESRSFSSIMTDDLLEDISIETEERYHELGLQVVSHLSSELENVKKAAALDADSLTGTTAKLGHGLMKTRDLLKRDLESQEADRGFYHTVESFVQNAEDDVTNLLEEEKKIMDLVKSTGDYFHGNTGRDEGLRLFIIVRDFLIMLDKVCKEVGDAQKKAARTPKQETAPRSSISDLRPPPSPDHRKQLFPAIIERRTDDFSSDDEKERMLTFVSSLKGGSGMLVTNTCQSKMANDKPDTQVTGRIKHPKPKGDQTPINPPINLQTRKTQNLVERNSRSFGNSTGERIFECGSKTGSEKQLEFATMEVYC	1001

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g0928	1001	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	374	853	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	924	954	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	847	881	-	-
	Glsi04g0928	1001	Gene3D	Formin, FH2 domain	436	865	IPR042201	-
	Glsi04g0928	1001	Pfam	Formin Homology 2 Domain	433	837	IPR015425	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	292	310	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	292	411	-	-
	Glsi04g0928	1001	PANTHER	FORMIN-RELATED	143	891	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	174	199	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	333	411	-	-
	Glsi04g0928	1001	SMART	it6_source	431	852	IPR015425	-
	Glsi04g0928	1001	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	431	863	IPR015425	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	258	278	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	174	206	-	-
	Glsi04g0928	1001	Coils	Coil	786	806	-	-
	Glsi04g0928	1001	MobiDBLite	consensus disorder prediction	256	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g0928	Glsi-ChrGlsi04	7391620	7397588	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g0928	408	890	FH2 protein (formin) Gene Family	AT5G54650	65.567	0.0	610

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi14g1171	14	12895790	12903245	Glsi04g0928	04	7391620	7397588	CCT
	Glsi04g0928	04	7391620	7397588	Glsi04g0928	04	7391620	7397588	ECH