Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0922 ATGAAAGGGGAGTCAATAGGACTGATCATTGGAATTTCCATAGGTGTGGTTATTGGAGTGGTTTTGGCTATCTCTGCACTTTTCTGTCTAAGATACCATAGGAAGCGTTCACTGATAGGCAATAGCAGTTCCCGGAGGGCAGCTACCATACCCATCCGTGCAAATGGTGCCGATTCTTGTACTATTCTATCAGACTCAACATTAGGTCCAGAATCACCTGTAAAGTCTGGAAGGAATGGCATGTCCTTTTGGGTTGATGGATTTAAGAAGAGTAACATGATTTCAGCATCTGGAATACCTGAGTATTCATACAAGGATCTGCAGAAGGCAACATATAATTTTACAACACTCATAGGACAAGGTGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGGGAGACTGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAGGAATTCCAGACAGAGGTTATGTTGTTGGGAAGGCTACACCATAGAAACCTGGTGAATTTGATTGGATATTGTGCAGAAAAGGGTCAGCATATGCTTATTTATGTCTACATGAGTAAAGGCAGCTTGGCTTCCCACTTGTATAGTGTAGAGATCAGGGCACTGAACTGGGACTTAAGGGTTTATATAGCTTTGGATGTAGCAAGAGGCTTGGAGTATCTTCACGATGGGGCAGTTCCTCCTGTGATCCATCGAGATATCAAATCTTCGAATATTCTGTTAGATCAGTCCATGCGAGCTAGGGTTGCTGATTTTGGGCTTTCAAGAGAAGAGATGGTGGACAAGCATGCAGCTGTACGGGGCACCTTTGGCTATCTTGACCCGGAGTATGTCTCTTCAGGGACATTCACTAAAAAAAGTGATGTATACAGTTTTGGGGTGTTGCTTTTTGAACTCATAGCAGGCAGAAATCCTCAACAGGGTCTTATGGAATATGTTGAACTTGCTGCAATGAACACTGAAGGTAAAGTTGGTTGGGAGGAAATAGTGGATTCTCGCCTTGAAGGAAAGTTTGATATTCAAGAGCTCAATGAAGTGTCAGCCCTTGCATACAAATGCATAAACCGTGCCCCAAGGAAACGCCCTTCCATGAGGGACATAGTGCAGGTGCTGACACGGATTTTGAAAAGGAACCCTAGGAATCACCACAAGACCTTGTCAGCCACTGCAGATGAAGTAGCTTCAATTGATGGTGATCAGCCGGAAACCAAGATTACTGTTACTGATCATCAGAGAGAAGAATCTATGGATAGTGCAGTTGATGTCTATGAAGTATAG 1287 0.4328 MKGESIGLIIGISIGVVIGVVLAISALFCLRYHRKRSLIGNSSSRRAATIPIRANGADSCTILSDSTLGPESPVKSGRNGMSFWVDGFKKSNMISASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFQTEVMLLGRLHHRNLVNLIGYCAEKGQHMLIYVYMSKGSLASHLYSVEIRALNWDLRVYIALDVARGLEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAVRGTFGYLDPEYVSSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKFDIQELNEVSALAYKCINRAPRKRPSMRDIVQVLTRILKRNPRNHHKTLSATADEVASIDGDQPETKITVTDHQREESMDSAVDVYEV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0922 428 Gene3D Phosphorylase Kinase; domain 1 84 187 - -
Glsi04g0922 428 SUPERFAMILY Protein kinase-like (PK-like) 93 374 IPR011009 -
Glsi04g0922 428 PANTHER OS01G0750732 PROTEIN 3 396 - -
Glsi04g0922 428 SMART serkin_6 112 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0922 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Glsi04g0922 428 ProSiteProfiles Protein kinase domain profile. 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0922 428 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Glsi04g0922 428 CDD STKc_IRAK 118 377 - -
Glsi04g0922 428 Pfam Protein tyrosine and serine/threonine kinase 114 374 IPR001245 GO:0004672|GO:0006468
Glsi04g0922 428 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 394 - -
Glsi04g0922 428 Gene3D Transferase(Phosphotransferase) domain 1 188 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0922 Glsi-ChrGlsi04 7353829 7357771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0922 24 374 Glycoside Hydrolase AT3G07070 40.000 3.83e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Glsi04g0922 PK_Tyr_Ser-Thr 3.3e-52 CL0016