Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0903 ATGGCGGCGATGAGAACGGCAGTGGCGGCGCCTCGCGGTCTAAGGCGGCTTTTATCAACCACTCCGGCTTCGATGTTTGCTCCCCCTCCTGCGGGGACGGCTCCTGCTCGAGAGCAGGCTGAGCCTAGCACCAACCTCTTCGTCTCTGGACTTAGCAAACGTACTACTACAGAGAAGCTAAAGGAGGCATTTTCCCAGTTTGGTGAAGTTGTTCATGCTAGAGTGGTAACTGATAAGGTATCAGGTTACTCTAAAGGGTTTGGTTTTGTAAGATATGCTACTATAGAAGAAGCTGCAAAGGGCATTGAAGGCATGGATGGAAAGTTTCTGGATGGTTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACTGGGGCAACCTGGACAACCTATGCCTCCTCCATATGGCCAGCGGTGA 423 0.513 MAAMRTAVAAPRGLRRLLSTTPASMFAPPPAGTAPAREQAEPSTNLFVSGLSKRTTTEKLKEAFSQFGEVVHARVVTDKVSGYSKGFGFVRYATIEEAAKGIEGMDGKFLDGWVIFAEYARPRPPLGQPGQPMPPPYGQR 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0903 140 SUPERFAMILY RNA-binding domain, RBD 28 138 IPR035979 GO:0003676
Glsi04g0903 140 FunFam RNA recognition motif-containing protein 24 133 - -
Glsi04g0903 140 CDD RRM_SAFB_like 45 118 - -
Glsi04g0903 140 MobiDBLite consensus disorder prediction 21 41 - -
Glsi04g0903 140 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 122 IPR000504 GO:0003723
Glsi04g0903 140 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 46 112 IPR000504 GO:0003723
Glsi04g0903 140 Gene3D - 23 128 IPR012677 -
Glsi04g0903 140 SMART rrm1_1 45 118 IPR000504 GO:0003723
Glsi04g0903 140 PANTHER NUCLEOLAR PROTEIN 8 25 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0903 Glsi-ChrGlsi04 6657941 6663875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0903 45 121 Eukaryotic Initiation Factors Gene Family AT2G23350 37.662 3.37e-11 57.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0903 04 6657941 6663875 Glsi04g0903 04 6657941 6663875 ECH