Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0899 ATGGCCTCCATGCCGTTGGGGCCGCACCACCATCAAGCACCGCCAGCAGCAGTTACACAACCACCACCTCAGTTGCAGGCGCAAGCTGAGAATGACCCACTTGCTCGCCGTGGTTCCGATATGGAAACCGACAAGGAAATGTCAGCTACAGTTATCGACGGCAATGATGCAGTCACTGGCCATATAATCTCCACCACAATTGGAGGCAAAAATGGTGAACCTAAACAGACAATCAGTTACATGGCTGAGCGTGTTGTTGGCACTGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGACAGTGGCTATAAAGAAGGTCCTGCAGGATCGGCGGTACAAAAATCGTGAGCTGCAGTTAATGCGCTTGATGGATCACCCAAATGTGATTTCCCTGAAGCACTGTTTTTTCTCTACAACAAGCAGAGATGAACTATTTCTGAATTTGGTAATGGAATATGTCCCTGAGACAATGTATCGAGTTCTAAAACACTACAGTAGTATGAACCAGAGGATGCCCCTCATCTATGTGAAACTTTATACATATCAAATCTTTAGGGGACTAGCATATATTCACACAGTACCAGGAGTTTGCCATAGAGATGTGAAGCCTCAAAATCTTTTGGTTGATCCTCTAACTCACCAAGTTAAGCTTTGTGATTTTGGGAGTGCAAAAGTTTTGGTCAAGGGTGAATCAAACATTTCGTACATTTGTTCACGTTACTATCGGGCTCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATTGATATCTGGTCAGCTGGTTGTGTCCTTGCTGAGCTTCTTCTAGGCCAGCCACTATTTCCAGGAGAAAATCAGGTGGATCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCGACCCGAGAAGAAATTCGTTGCATGAACCCTAGTTATACAGATTTTAGATTCCCTCAGATTAAAGCTCATCCTTGGCACAAGGTTTTCCACAAGCGTATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCGAGTCTTCGCTGCACTGCACTGGAAGCATGCACACATCCCTTCTTTGATGAGCTCCGGGAGCCCAATGCCCGATTACCCAATGGCCGTCCGCTGCCCCCACTTTTTAATTTCAAACAGGAATTAGCTGGAGCATCGCCTGAATTGATCAATAGGCTCATCCCTGAGCATGTTAGGCGGCAGATTGGTCTGAACTTCCCACATCCGGCTGGTACGTAG 1263 0.4592 MASMPLGPHHHQAPPAAVTQPPPQLQAQAENDPLARRGSDMETDKEMSATVIDGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRLMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETMYRVLKHYSSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPSYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALEACTHPFFDELREPNARLPNGRPLPPLFNFKQELAGASPELINRLIPEHVRRQIGLNFPHPAGT 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0899 420 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 44 409 - -
Glsi04g0899 420 MobiDBLite consensus disorder prediction 1 51 - -
Glsi04g0899 420 SUPERFAMILY Protein kinase-like (PK-like) 79 388 IPR011009 -
Glsi04g0899 420 Gene3D Phosphorylase Kinase; domain 1 65 159 - -
Glsi04g0899 420 CDD STKc_GSK3 75 367 IPR039192 -
Glsi04g0899 420 SMART serkin_6 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0899 420 Gene3D Transferase(Phosphotransferase) domain 1 160 407 - -
Glsi04g0899 420 MobiDBLite consensus disorder prediction 35 49 - -
Glsi04g0899 420 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Glsi04g0899 420 Pfam Protein kinase domain 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0899 420 ProSitePatterns Protein kinases ATP-binding region signature. 86 110 IPR017441 GO:0005524
Glsi04g0899 420 FunFam Shaggy-related protein kinase kappa 160 407 - -
Glsi04g0899 420 FunFam Glycogen synthase kinase-3 beta 64 159 - -
Glsi04g0899 420 ProSiteProfiles Protein kinase domain profile. 80 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0899 Glsi-ChrGlsi04 6632676 6637900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0899 84 402 MAP Kinase Gene Family AT3G59790 35.030 2.41e-56 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Glsi04g0899 Pkinase 6.5e-64 CL0016