Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0898 ATGGCTTCCTTTACCCACTTCTTCATTGCATTATCCATCCTTTCTCTCTTGGCCTCTTCCGCCAATGCCCAACTTTCCCCCAACTTCTATGCCAAATCTTGCCCCAACCTTCAAACCATTGTGCGTAGTGCAATGAGGCAAGCTCTCACTAAAGAAGCCCGAATGGGTGCCTCTATTCTTCGCTTGTTCTTCCACGACTGCTTCGTCAATGGTTGCGATGCATCGATCCTCCTGGACGACACTGCCACCTTCACCGGCGAGAAAAAGGCAGCACCAAACCTATCGGCAAGGGGTTTTGAAGTGATTGATGCCATTAAAACTAGTGTGGAAGCTGCTTGCAATGGCACTGTGTCTTGTGCAGATATCCTAGCACTTGCTGCAAGAGAGGGTGTATTTCTGCTAGGAGGACCCTCGTGGACAGTACCTCTTGGCCGGAGAGATGCAAGAACAGCGAGCCAAAGTGGGGCCAACAGCCAAATTCCAGGCCCGTCCTCCGGTCTCGCCACTCTCACCTCCATGTTCGCAGCCAAAGGCCTGAGCGCTCGCGAGATGACAGTGCTCTCCGGCGCCCACACCATAGGGCAAGCCCAGTGCCTCTTCTTCAGGAACCGCATCTACAACGAGACCAACATCGACGCTAGCTTTGCAACCACAAGAAAGGCCAATTGCCCTAGAACTGGAGGGGATACCAACTTGTCCCCTCTCGACGTGACCCCAACCCGTTTTGACAACAACTACTATAGGGACCTTGTGGCTCGCCGTGGCCTATTCCATTCGGACCCGGAGCTTTTCAATGGCGGGTCTCAAGATGCCTTGGTTAGGACTTATAGTACCAATAGTGCTGCATTTTTCAATGATTTTGCTGCTGCTATGGTGAAGATGGGCAATATTACTCCTCTCACTGGGACCCAAGGAGAGATCAGAAAGAAATGCGGGGCTGTGAACTAA 948 0.52 MASFTHFFIALSILSLLASSANAQLSPNFYAKSCPNLQTIVRSAMRQALTKEARMGASILRLFFHDCFVNGCDASILLDDTATFTGEKKAAPNLSARGFEVIDAIKTSVEAACNGTVSCADILALAAREGVFLLGGPSWTVPLGRRDARTASQSGANSQIPGPSSGLATLTSMFAAKGLSAREMTVLSGAHTIGQAQCLFFRNRIYNETNIDASFATTRKANCPRTGGDTNLSPLDVTPTRFDNNYYRDLVARRGLFHSDPELFNGGSQDALVRTYSTNSAAFFNDFAAAMVKMGNITPLTGTQGEIRKKCGAVN 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0898 315 Gene3D - 28 311 - -
Glsi04g0898 315 FunFam Peroxidase 161 294 - -
Glsi04g0898 315 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Haem peroxidase superfamily signature 183 198 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Haem peroxidase superfamily signature 135 147 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Haem peroxidase superfamily signature 235 250 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Haem peroxidase superfamily signature 117 134 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PANTHER PEROXIDASE 72-RELATED 22 312 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 ProSitePatterns Peroxidases proximal heme-ligand signature. 183 193 IPR019793 -
Glsi04g0898 315 SUPERFAMILY Heme-dependent peroxidases 24 315 IPR010255 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 135 150 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 233 248 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 249 266 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 289 302 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 116 126 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 182 194 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 PRINTS Plant peroxidase signature 97 110 IPR000823 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 FunFam Peroxidase 28 167 - -
Glsi04g0898 315 Gene3D Peroxidase, domain 2 161 294 - -
Glsi04g0898 315 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Glsi04g0898 315 CDD secretory_peroxidase 24 314 IPR033905 GO:0004601|GO:0042744
Glsi04g0898 315 ProSiteProfiles Plant heme peroxidase family profile. 24 315 IPR002016 GO:0004601|GO:0006979|GO:0020037
Glsi04g0898 315 Pfam Peroxidase 41 278 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0898 Glsi-ChrGlsi04 6628236 6629976 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0898 23 315 Peroxidase AT5G05340 65.657 5.81e-143 404