Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0897 ATGGCGACCCTGAAACTGCTCCTCTCTCAAGCTCGCCGCTATTGCATCACCAACCATTGTTCTTACTTCCACTCTCCCCGTTTTCTTCTGTCTCGGAGATCCCTTTGTTCGTCATCATCTTCATCTTCATCTTCACAACCCGATGAATCAGAGTCAAATCCTCCACCTCCAGAGCCTCCAAAGAGATCCTCCGGACCCATTCCTATCCAGCCCATTTCGTACCCGGTGAAACCTAAAGACCCGTCGCCAACAGAAAGTGAAACCTCCGAAGCTCAGCCACACAACCAATCACCGGTACCGCCTACTCCCCATCTGCGTGGGCCTACATTGGCAACAGATAGCCCGGAATCCCAGCGGGCTTGGACCCGGGAAGATATTCGGTATGTAAAGGATGCGCCTTCAATAACGCCGGTGTCATATCCTTTGCGGGTGGCGCCGCTTCCTGAAGATAAGGTAACTGCTGAAGGAGGACTGGATGAAGGCACGAAGGAGAACGAAGAATTGGAGAAAGAGAGGAGGAAAATTGAGGCGGATGATAAATTAAAGAGGAGGATTTTGAGAGCTGCGGAAGAGGAGAAGATGCGGGTTCCTTTTCCGACTCTAATAAAGGTGAAGCAAAAGGAGAAGCCGCCTATCCTTGAGTTGATGGAGGCACTTCGGCAAGTTAAGGCCAATGCCAAGGCAAAATTTGATGAAACTGTTGAAGTGCATGTAAGATTGGGTATTGAATCAAAGCGAACAGAACTGGCAGTTCGCGGTACTATGGTTCTGCCTCACGGTGCTCCTAAGGCCGTCAGTGTGGCTGTTTTTGCAGAAGGGCCAGAGGCAGAGGAAGCTAGAGCCGCAGGAGCTGATATAGTTGGTGGTAAAGAGCTTATTGAGGAGATTGCTAATGGTCATAACAAGCTCAGAGTTGACAAGTGCTTCTCAACTCCAGGAATGGCACCTCATCTTGGAAAGATAGCACAATATCTTAGAAAGCGCAGATTGATGCCAGACAAGAAACTAGGTACTCTGACCAGTGATATTACTGGGCAGTTGAAAGAGTTAAGAAAGGGTCGTGTTGAGTTTAAAATGGAAAGTAAATCAATTGTGCATGTGGGAATTGGAAAGGTAAGTTTCAAAGAGGAGTATTTACGCAACAACATAGGTGCATTTATGAATGCTCTATTGCTTGCGAAGCCTGCTGGTTTAAAGAAGACTTCAAAATATGCTGGGTATGTTCTATCTGTCCATATATGCAGTACGATGGGCCCAGGATTCCCTGTTTCAATACAATCGCTATCCAGAGCAGCAGATAACTACAAGTTTGTGAATCTGTTGGACTACCATTTTGACATTCTGTATGATGATTATAAGAGAAAAGCGCAGATTGCATTAGTAGCCATTGTGCTGCTTGCTTCCGTAGCTGTGGCTTCGCTGCTAGTTGCTTTCAGCTATTATTGCTACATCAGCAACAAGGTAGCCAAGCGCCGCAAGAACCAGAAGAATGCTGACAATAACGAGAAAAGTGAGTTTGCAAATCTGCAAGTTGCTGCTGAGAAAGGACTTCAGGTGTTCACTTTCAAGCAGTTGCATTCAGCAACGGGTGGATTCAGCAAGTCAAATGTGGTTGGTCACGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATGATGGCAGGAAAGTTGCAATTAAATTCATGGATCAGGCAGGAAAGCAGGGAGAAGAAGAATTTAAAGTAGAGGTTGAATTGCTAAGTCGGTTGCGATCTCCATATTTGCTGGCGTTGCTCGGGTACTGCTCTGATAATAATCATAGACTGCTGGTGTATGAGTTCATGGCAAATGGTGGTCTGCAGGAACATCTTTATCCTGTCAGCAATTCTAATGTTATATCCATAAAATTGGATTGGGAAACCCGCTTACGAATAGCACTTGAAGCTGCTAAGGGTTTGGAATATCTTCATGAATATGTCAGTCCCCCAGTGATTCACAGAGATTTTAAGAGTAGCAACATTCTTTTGGACAAAAAATTTCATGCAAAAGTTTCTGATTTTGGATTGGCCAAGCTTGGATCTGATAAAGCTGGTGGACATGTCTCCACTCGAGTTTTGGGCACCCAGGGATATGTTGCTCCTGAATATGCACTAACAGGGCATTTAACAACAAAATCAGATGTATACAGTTATGGTGTTGTACTTTTGGAGCTGCTCACTGGCCGAGTGCCAGTTGATATGAAGAGACCGCCTGGAGAAGGCGTTCTTGTTTCTTGGGCTTTACCCCTTTTGACTGATAGAGAAATGGTGGTAAAGATTATGGATCCTGCATTGGAGGGTCAGTACTCAATGAAAGAGGCTGTCCAGGTAGCTGCAATTGCTGCAATGTGTGTGCAACCAGAGGCAGATTACCGGCCGCTCATGGCGGATGTTGTTCAGTCATTAGTTCCATTGGTGAAGACTCATCTGTCGACCTCAAAGGTAGGCACCTGCTCTAGTTTCCATGCCAATAAGTTGTCCCCTGCTCAAGATTTAGTTAGAGCAAATGCACAACTCCTGTGTAAATGA 2547 0.4566 MATLKLLLSQARRYCITNHCSYFHSPRFLLSRRSLCSSSSSSSSSQPDESESNPPPPEPPKRSSGPIPIQPISYPVKPKDPSPTESETSEAQPHNQSPVPPTPHLRGPTLATDSPESQRAWTREDIRYVKDAPSITPVSYPLRVAPLPEDKVTAEGGLDEGTKENEELEKERRKIEADDKLKRRILRAAEEEKMRVPFPTLIKVKQKEKPPILELMEALRQVKANAKAKFDETVEVHVRLGIESKRTELAVRGTMVLPHGAPKAVSVAVFAEGPEAEEARAAGADIVGGKELIEEIANGHNKLRVDKCFSTPGMAPHLGKIAQYLRKRRLMPDKKLGTLTSDITGQLKELRKGRVEFKMESKSIVHVGIGKVSFKEEYLRNNIGAFMNALLLAKPAGLKKTSKYAGYVLSVHICSTMGPGFPVSIQSLSRAADNYKFVNLLDYHFDILYDDYKRKAQIALVAIVLLASVAVASLLVAFSYYCYISNKVAKRRKNQKNADNNEKSEFANLQVAAEKGLQVFTFKQLHSATGGFSKSNVVGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLRSPYLLALLGYCSDNNHRLLVYEFMANGGLQEHLYPVSNSNVISIKLDWETRLRIALEAAKGLEYLHEYVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREMVVKIMDPALEGQYSMKEAVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTHLSTSKVGTCSSFHANKLSPAQDLVRANAQLLCK 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0897 848 ProSitePatterns Protein kinases ATP-binding region signature. 538 560 IPR017441 GO:0005524
Glsi04g0897 848 SUPERFAMILY Protein kinase-like (PK-like) 515 808 IPR011009 -
Glsi04g0897 848 Pfam Ribosomal protein L1p/L10e family 223 419 IPR028364 -
Glsi04g0897 848 Gene3D Transferase(Phosphotransferase) domain 1 608 825 - -
Glsi04g0897 848 Coils Coil 151 178 - -
Glsi04g0897 848 PANTHER OS07G0668900 PROTEIN 493 817 - -
Glsi04g0897 848 Gene3D Phosphorylase Kinase; domain 1 489 607 - -
Glsi04g0897 848 ProSiteProfiles Protein kinase domain profile. 532 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0897 848 Gene3D - 214 423 - -
Glsi04g0897 848 SUPERFAMILY Ribosomal protein L1 206 424 IPR023674 -
Glsi04g0897 848 Gene3D - 260 353 IPR016095 -
Glsi04g0897 848 Pfam Protein kinase domain 533 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0897 848 CDD STKc_IRAK 538 811 - -
Glsi04g0897 848 CDD Ribosomal_L1 215 423 IPR028364 -
Glsi04g0897 848 MobiDBLite consensus disorder prediction 36 125 - -
Glsi04g0897 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
Glsi04g0897 848 FunFam Serine/threonine-protein kinase PBS1 498 607 - -
Glsi04g0897 848 MobiDBLite consensus disorder prediction 50 78 - -
Glsi04g0897 848 FunFam 50S ribosomal protein L1 260 353 - -
Glsi04g0897 848 FunFam Receptor-like serine/threonine-protein kinase ALE2 608 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0897 Glsi-ChrGlsi04 6607849 6620955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0897 452 834 Receptor kinase-like Gene Family AT3G58690 79.112 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Glsi04g0897 Pkinase 3.4e-43 CL0016