Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0880 ATGCGTCCACCTGTGAAGAAAATCAGTTTCAGCAGAGGCCACGTGGTCGAGGTTTGCAGCAAAGAAGATGGATTCCTAGGTTCTTATTACGAAGCCAGAGTGGTGTCCCAACTTGAGAATGGCCTCTACGTTGTGCAGTACAAGAACCTATTGGAAGATGACGAATCCCAGCCTTTGACTGAGACTGTGTACCCTAAGGAGCTTCGTCCTTTGCCACCCAAAATCCCCGTTAATGCTTCTGGGTTTTCGATGCACCAAAAGGTCGATGCTTTCGACAACGATGGTTGGTGGGTCGGCGTCATCACTGGGAAAAGAGACCCCAACTGCTACTGTGTCTATTTTGAAACCACCCACGAAGAGATCGCATACCCCTTGTCTCAGCTCAGGGTTCATCATGATTGGATCTATGGCAACTGGGTTATGTCCAAGAAGCCTCAATTGAAGTAA 447 0.4832 MRPPVKKISFSRGHVVEVCSKEDGFLGSYYEARVVSQLENGLYVVQYKNLLEDDESQPLTETVYPKELRPLPPKIPVNASGFSMHQKVDAFDNDGWWVGVITGKRDPNCYCVYFETTHEEIAYPLSQLRVHHDWIYGNWVMSKKPQLK 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0880 148 CDD Tudor_Agenet_AtDUF_rpt1_3 10 73 - -
Glsi04g0880 148 Pfam Agenet domain 13 73 IPR008395 -
Glsi04g0880 148 Gene3D - 1 82 - -
Glsi04g0880 148 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 8 144 - -
Glsi04g0880 148 CDD Tudor_Agenet_AtDUF_rpt2_4 86 130 - -
Glsi04g0880 148 SMART agenet_At_2 80 136 IPR014002 -
Glsi04g0880 148 SMART agenet_At_2 8 76 IPR014002 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0880 Glsi-ChrGlsi04 6450576 6451022 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0880 20 134 PHD Transcription Factor Family AT5G58610 31.655 3.53e-13 63.9