Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0877 ATGTCGCAGACTGGGAAGTCTATGCAACAACTGGGCTTCGATTCTCTCTCATCTCGATTCCACGAATCGCTGAATTGTGAAGAGAACAAGCCTGATTTTAAAGAACTCGATCTGGGTTCCCCTGTTTCGCCATTGAAAACTAGTGGCGGAGTTAATGCTGGCGGCGGCGGCGCCGTTGCCAACACTTCAAGCAGCAGTTCTAGCTCCTCCGGCTCAGCTACAGGCAAAAACAGCATCGTCAAATTGCCCAACAGACTTGATGGGAGGCCAAGCAACCACTCCGGCGAGCTCACTGAGACCAACCCAAATGCCTCCGAGAGCCTCCGATCCGCTGCGACAATGCGCAGTACCAAACCGGGTCATAGGAGATCGGTTTCCGCCGGAGCTCCATTAATATACTCCGGTGGAAGTTTCAGCAGCTCAAGCAATAATGTTTGCGCGAATGGCGCAACTTCAGGGACCAATTTTTTCCCAAGCGGCAACATTTGCCCGACAGGGAAGACCTTTAAACCCGGTTCGGCGTCTCGAGCGTCCAATAGAACCGATGTTTTGGGTTCAGGAACAGCGAACTATGGCCATGGCAACATAATGCGCGGTGGTACAAAATTGGGCAACGGTGGTTCTGATCCAGAGGAGGTGAAAAAGGCCGGAAATGAATTATACAAAAGCGGGTACTTTGTAGAAGCATTGTCGTTGTATGATCGTGCTATTTCGATCTCACCGAACAATGCAGCTTATCGGAGTAACCGGGCGGCGGCACTGACGGCTCTGGGGAGGTTGGCGGAGGCGGCGAGGGAGTGTGAAGAAGCTGTGAAATTGGACCCCGGCTATGCCAGGGCGCACCAGAGACTGGCTTCTCTTTACCTGCGATTTGGGCAGTTTGAAAATGCCCAGAGCCACCTCTGTCTCCCAGGACAACAAGTGGATAAATCTGAAATGCAAAAGCTGAGGTTACTAGAGAAGCATCTGAACCGATGTGCAAAGGCACGAAAGATTGGCGATTGGAAGAGTGCACTTAGGGAATCAGACGCGGCCATTGCAGTTGGAGCAGATTTCTCACCTCAGCTTGTTGCTTGTAAAGCTGAAGCCTATTTGAAACTTCATCTACGTGAGGACGCTGAGTCCAGCCTCTCAAACATTCCAAATCTAGAAGCTTGCTCTCCATTCTGCTCTCAAACCAAGTTCTTTGGTATGGTTGGTGAAGCTTATGTGCCCTTTGTCCGCGCTCAGGTTGAGATGGCCTTAGGAAGGTTTGAGAATGCAGCAGCAGCAGCAGAAAAGGCCAGCCAGATAGATTACAGTAATGTGGAAGTTGCGAGAGTTGTAAATACTGTGAAAATGTTGGTGAGGGCTCGTTCCCGAGGCAATGATCTTTTCAGCTCTGGCAAATTTTCTGAAGCTTGCTCTGCTTATGGAGAAGGCCTCAAATATGACAGTTCCAACTATGTTCTATACTGCAATAGAGCTGTTTGTTGGTCTAAACTTGGACTGTGGGAAAAGTCTGTTGAGGATTGCAACCAAGCCCTCAACATTCAACCAACCTTCACCAAGGCCCTTTTCCGCAGGGCTGTGTCAAATGCAAAGCTTGAAAGATGGGCAGAAGCTGTGAAAGATTATGAGGCTTTAAAGCGAGAACTTCCCAGAGACAATGAAGTTGCTGAATCTCTCCGTCAGGCTCAACTTGCATTGAAGAAATCTCAGGGGGAAATGTATGGCACAAAGTTTGGTGTTGAAGTTGAAGACATCTTTACACTGGAAAGATTCAAAGCTGCAATTGCTTTTGCTGGTATTTCAGTGGTTCATTTCAAAGAGGCATCGAATGAACTATGTGAAGAAATATCCCCATTCATAAATATGCTGTGCGTTAGATACCCATCTGTTAAATTCATCAAGGTTGATGTGGAAGAGGGTCTAACTATAGCAAAAGCAGAGAGCATAAGAACTGTGCCAACTTTCAAAATCTATGCAAATGGAGAGAAGGTGAAAGAGATGATCCAGCCAAGCCATCAGTTCTTGGAGGACACAGTGAGGAGCTGTAGTAACCTTTAA 2049 0.4788 MSQTGKSMQQLGFDSLSSRFHESLNCEENKPDFKELDLGSPVSPLKTSGGVNAGGGGAVANTSSSSSSSSGSATGKNSIVKLPNRLDGRPSNHSGELTETNPNASESLRSAATMRSTKPGHRRSVSAGAPLIYSGGSFSSSSNNVCANGATSGTNFFPSGNICPTGKTFKPGSASRASNRTDVLGSGTANYGHGNIMRGGTKLGNGGSDPEEVKKAGNELYKSGYFVEALSLYDRAISISPNNAAYRSNRAAALTALGRLAEAARECEEAVKLDPGYARAHQRLASLYLRFGQFENAQSHLCLPGQQVDKSEMQKLRLLEKHLNRCAKARKIGDWKSALRESDAAIAVGADFSPQLVACKAEAYLKLHLREDAESSLSNIPNLEACSPFCSQTKFFGMVGEAYVPFVRAQVEMALGRFENAAAAAEKASQIDYSNVEVARVVNTVKMLVRARSRGNDLFSSGKFSEACSAYGEGLKYDSSNYVLYCNRAVCWSKLGLWEKSVEDCNQALNIQPTFTKALFRRAVSNAKLERWAEAVKDYEALKRELPRDNEVAESLRQAQLALKKSQGEMYGTKFGVEVEDIFTLERFKAAIAFAGISVVHFKEASNELCEEISPFINMLCVRYPSVKFIKVDVEEGLTIAKAESIRTVPTFKIYANGEKVKEMIQPSHQFLEDTVRSCSNL 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0877 682 SUPERFAMILY TPR-like 320 439 IPR011990 GO:0005515
Glsi04g0877 682 Gene3D Tetratricopeptide repeat domain 208 566 IPR011990 GO:0005515
Glsi04g0877 682 SUPERFAMILY TPR-like 211 300 IPR011990 GO:0005515
Glsi04g0877 682 ProSiteProfiles TPR repeat profile. 210 243 IPR019734 GO:0005515
Glsi04g0877 682 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 20 677 IPR044534 -
Glsi04g0877 682 MobiDBLite consensus disorder prediction 91 120 - -
Glsi04g0877 682 SUPERFAMILY TPR-like 453 565 IPR011990 GO:0005515
Glsi04g0877 682 Pfam Tetratricopeptide repeat 216 277 - -
Glsi04g0877 682 MobiDBLite consensus disorder prediction 170 190 - -
Glsi04g0877 682 SMART tpr_5 402 435 IPR019734 GO:0005515
Glsi04g0877 682 SMART tpr_5 482 515 IPR019734 GO:0005515
Glsi04g0877 682 SMART tpr_5 244 277 IPR019734 GO:0005515
Glsi04g0877 682 SMART tpr_5 210 243 IPR019734 GO:0005515
Glsi04g0877 682 SMART tpr_5 448 481 IPR019734 GO:0005515
Glsi04g0877 682 SMART tpr_5 516 549 IPR019734 GO:0005515
Glsi04g0877 682 CDD TRX_family 586 665 - -
Glsi04g0877 682 Pfam Thioredoxin 585 669 IPR013766 -
Glsi04g0877 682 SUPERFAMILY Thioredoxin-like 549 668 IPR036249 -
Glsi04g0877 682 Gene3D Glutaredoxin 567 679 - -
Glsi04g0877 682 FunFam TPR repeat-containing thioredoxin TTL4 573 680 - -
Glsi04g0877 682 MobiDBLite consensus disorder prediction 57 79 - -
Glsi04g0877 682 MobiDBLite consensus disorder prediction 170 188 - -
Glsi04g0877 682 MobiDBLite consensus disorder prediction 28 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0877 Glsi-ChrGlsi04 6439310 6442517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0877 204 301 U-box Gene Family AT3G07370 29.592 2.43e-06 48.1