Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0875 ATGGAAGCTTTTGATTGGAGCTCAGGCATTCCTGGACATGCCTCAGAGAGGAGTCTTGATGGTTTTCTAGTTAACTCTGCCGCGGTGGGAAGTGGGTTCGCTTCATCTTCATCCTTGGTTTTGGATAGCGAGAGGGGAGAGCTTGTGGCGACCCCTGTCAAATCGGAACGCCAAGGTGTGTCCACTGATAGAAGTATTGAAGCTTTGAAGAACCATAGCGAAGCAGAGCGGAGGAGGAGAGCAAGGATTAATGCACATCTTGATACGCTTAGGAGTGTAATCCCAGGAGCTAACAAGATGGACAAAGCGTCGTTGCTTGCTGAGGTTATTGGACATTTGAAACAGCTGAAAAGGAATGCAGCCCAAGCATGTGAAGGATTGATGATACCAAAGGAGATTGATGAAATAAGAGTTGAAGAACAGGAGAGTGGATCAAATGGTTTCCCTTATTCAATTAGGGCATCTCTATGTTGTGACTATAAACCTGGGTTGTTGTCTGATATAAGACAAGCACTTTATGCCCTTCATCTTATGATAATGAGGGCAGAAATCTCAACCTTGGAAGGCAGGATGAAGAATGTCTTTGTTATAATTAGCTGCAAAGAACAGAACATTGAAGATCCTGAACACCGTCAGTTTCTTGCCAATTCTGTTCACCAAGCTATTAGGTCTGTACTTGATAGATTTTCTTCTTCACAGGACCTCTTAGGAACCAGAAAGAGACGGAGGATTTCTATATTCAATTCATCATCTTTAGGAGATTTCTTGTGA 771 0.4319 MEAFDWSSGIPGHASERSLDGFLVNSAAVGSGFASSSSLVLDSERGELVATPVKSERQGVSTDRSIEALKNHSEAERRRRARINAHLDTLRSVIPGANKMDKASLLAEVIGHLKQLKRNAAQACEGLMIPKEIDEIRVEEQESGSNGFPYSIRASLCCDYKPGLLSDIRQALYALHLMIMRAEISTLEGRMKNVFVIISCKEQNIEDPEHRQFLANSVHQAIRSVLDRFSSSQDLLGTRKRRRISIFNSSSLGDFL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0875 256 PANTHER TRANSCRIPTION FACTOR BHLH30 33 250 IPR045847 GO:0003700|GO:0006355
Glsi04g0875 256 SMART finulus 73 122 IPR011598 GO:0046983
Glsi04g0875 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 68 124 IPR036638 GO:0046983
Glsi04g0875 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 116 IPR011598 GO:0046983
Glsi04g0875 256 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Glsi04g0875 256 Gene3D - 63 124 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0875 Glsi-ChrGlsi04 6408873 6410573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0875 34 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 38.496 4.19e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi04g0875 HLH 6.6e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0875 04 6408873 6410573 Glsi04g0875 04 6408873 6410573 ECH