Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0847 ATGTTAGATTCCACACCACAATTATCAAGTATAGCTCAGACAGCAAAAATTATGGAAGCCCAGAAGAAAGAGCTTTCTGCAACAGAACTACTTGGAGCTCAAACCCACATATGGAATCACATTTTCAGCTTCATAAGCTCCATGTCCCTTAAATCTGCTATTGACTTGGGCATTCCAGATATCATTCACAGTTATGGCAAACCCATGCCTCTTCCACAACTCATTTCTGCACTACCAATTCATCCTTCCAAAACCTGCGGCATCTACCGTTTGATGCGCATTTTGATCCATTCTGGCTTTTTCTCTCTGCAGAAAGTTTCTGAAACTGACCCAGAAGAGGGTTTTGTTTTAACCCATTCATCAACCCTTTTGCTCAAGGACCATCCCTTGAGTGTGACTCCTTTCTTGCTTGCCATGCTTGATCCAATCTTGACAAAGCCATGGTATAAGTTGGCTACTTGGTTCCAAAACGATGATCCTACGCCGTTTGGCACATGTCATGGGATGACAATTTGGAAATATGCAGGCCATGAGCCTAGACTTAACAGATTCTTCAATGATGCCATGGCTAGTGATGCTCGATTGGTTACTAGCGTGGTGATAGAGAAGTGTAAGGGAGTTTTTAAGGGGATGGAATCATTGGTTGATGTTGGAGGAGGGACAGGGACAGTGGCAAAGACAATTGCTAAAGAATTCCCTCGAATGCAATGCACTGTGTTCGATCTCCCACATGTGGTTTCTGGCTTGCAAGAGAGTGAGAATCTCAAGTTCGTAGAAGGGGATATGTTCGAAGATATTCCTCCTGGGGATGCCATTTTGTTGAAGTGGATAATGCATGATTGGAACGACGAGCAATGTGTGAAAATATTGAAGAACTGCAAGGAGGCAATTACAAGAAAAGGAAAAGAAGGAAAGGTGATTATAATAGACATGGTGATGGAGAGTGAGAAGGCAGATGATGAATCAGTTGAGACACAACTGTTCCTTGATATGCTGATGATGGTGTTGTACCCTGGAAAAGAGAGAAATGAGAAAGAATGGGCAAAGTTGATTTTCTCCGCTGGATTCAGTGGCTATAAGATATCTCCAGTTCTGGGTTTAAGGTCTCTCATTGAGGTTTATCCATAA 1128 0.4255 MLDSTPQLSSIAQTAKIMEAQKKELSATELLGAQTHIWNHIFSFISSMSLKSAIDLGIPDIIHSYGKPMPLPQLISALPIHPSKTCGIYRLMRILIHSGFFSLQKVSETDPEEGFVLTHSSTLLLKDHPLSVTPFLLAMLDPILTKPWYKLATWFQNDDPTPFGTCHGMTIWKYAGHEPRLNRFFNDAMASDARLVTSVVIEKCKGVFKGMESLVDVGGGTGTVAKTIAKEFPRMQCTVFDLPHVVSGLQESENLKFVEGDMFEDIPPGDAILLKWIMHDWNDEQCVKILKNCKEAITRKGKEGKVIIIDMVMESEKADDESVETQLFLDMLMMVLYPGKERNEKEWAKLIFSAGFSGYKISPVLGLRSLIEVYP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0847 375 Gene3D Vaccinia Virus protein VP39 125 375 IPR029063 -
Glsi04g0847 375 FunFam Coniferyl alcohol 9-O-methyltransferase 20 124 - -
Glsi04g0847 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 129 374 IPR029063 -
Glsi04g0847 375 Pfam Dimerisation domain 48 95 IPR012967 GO:0046983
Glsi04g0847 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 38 375 IPR016461 GO:0008168
Glsi04g0847 375 PANTHER O-METHYLTRANSFERASE 31 360 IPR016461 GO:0008168
Glsi04g0847 375 FunFam O-methyltransferase ZRP4 126 375 - -
Glsi04g0847 375 Gene3D - 18 124 IPR036388 -
Glsi04g0847 375 Pfam O-methyltransferase domain 148 357 IPR001077 GO:0008171
Glsi04g0847 375 SUPERFAMILY "Winged helix" DNA-binding domain 28 129 IPR036390 -
Glsi04g0847 375 PIRSF O-mtase 14 375 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0847 Glsi-ChrGlsi04 6158599 6159930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0847 48 361 Monolignol Biosynthesis Gene Families AT5G54160 35.423 9.35e-60 195