Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0845 ATGGCGGAATCTGAGGAAACGGTGAAATCTGGTGATAACCAACAATCAGAGCAAGTGTGTAGTTTCTTTAGAAAGCCAGTTAATAAAAAGAATATCAGAAAACGTACAATAGATAATGAAGATGATGAGGGGGTCTCAGAAAGTGAAAGCTCTTTGCTACACAGTCAGAGAAAGGCTATTAAACCTGATAATAAATTGTACTTTTCCACTGGACCCTCTAAAAGCTCTAGATCATCTGAAACTAGCGAACAATCTGAAAAGCAAGGGTTTCAGTTTGAGTCTTCAAAAGAGATTCAAGTTCAACATGATAGCAGAGCAACAGCAACACTAGAAACTGAGACTGAGTATTCTAGAGATGCCCGAGCTATTCGTGAGAGAGCTTTAAGGCAAGCAGAGGAGAAGTTGAAGGGAAAAGGCACAAGTTCTGGAGATGAAAAATTGTACAAGGGCATCCATACAAGATTTGATTATCAGCCAGACATATGCAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCGTGTACGTTTATGCATGACCGGGGTGATTATAAGTCTGGGTGGCAGTTAGAGAAGGAATGGGAAGAAGCAGAGAAAGCAAGGAGAATGAGATTAGCTGCAGGAGAGGATCTGGATGAGGAGGGTGCTGATTTGTCAGATGAAGATGATGAGGATTCATTACCATTTGCATGCTTTATTTGCAGGAAGCCTTTTGTGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGTGAGCATTGTGCATTGAAGCATCATGCCAAGAACAAGAAGTGTTTTGTGTGTAACCAGCCCACTCTCGGCATCTTTAATACAGCTCATGATATACGCAAGAGGATGGCTGCAGAGGTCTTTACATGTAACAAGGCAAAGCTAAAAGGTTGTTCCGACTATAGATTTCAGGATTCCTTTCGTAGTGAGGGTGATATCAAATGTTATGAGAAGTCAAATAGCCATCTTTGA 987 0.4134 MAESEETVKSGDNQQSEQVCSFFRKPVNKKNIRKRTIDNEDDEGVSESESSLLHSQRKAIKPDNKLYFSTGPSKSSRSSETSEQSEKQGFQFESSKEIQVQHDSRATATLETETEYSRDARAIRERALRQAEEKLKGKGTSSGDEKLYKGIHTRFDYQPDICKDYKETGYCGYGDSCTFMHDRGDYKSGWQLEKEWEEAEKARRMRLAAGEDLDEEGADLSDEDDEDSLPFACFICRKPFVDPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNTAHDIRKRMAAEVFTCNKAKLKGCSDYRFQDSFRSEGDIKCYEKSNSHL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0845 328 SMART c3hfinal6 156 183 IPR000571 GO:0046872
Glsi04g0845 328 ProSiteProfiles Zinc finger C3H1-type profile. 156 184 IPR000571 GO:0046872
Glsi04g0845 328 ProSiteProfiles Zinc finger RING-type profile. 233 271 IPR001841 -
Glsi04g0845 328 MobiDBLite consensus disorder prediction 7 22 - -
Glsi04g0845 328 SUPERFAMILY RING/U-box 232 277 - -
Glsi04g0845 328 CDD RING-HC_RNF113A_B 230 279 - -
Glsi04g0845 328 MobiDBLite consensus disorder prediction 1 115 - -
Glsi04g0845 328 SUPERFAMILY CCCH zinc finger 153 187 IPR036855 GO:0046872
Glsi04g0845 328 MobiDBLite consensus disorder prediction 68 107 - -
Glsi04g0845 328 ProSitePatterns Zinc finger RING-type signature. 248 257 IPR017907 -
Glsi04g0845 328 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 157 182 IPR000571 GO:0046872
Glsi04g0845 328 Pfam Zinc finger, C3HC4 type (RING finger) 232 274 - -
Glsi04g0845 328 SMART ring_2 233 270 IPR001841 -
Glsi04g0845 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 290 IPR013083 -
Glsi04g0845 328 PANTHER ZINC FINGER PROTEIN 183 153 291 IPR039971 -
Glsi04g0845 328 FunFam RING finger protein 113A 231 290 - -
Glsi04g0845 328 Gene3D - 154 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0845 Glsi-ChrGlsi04 6050109 6052120 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0845 15 291 C2H2 Transcription Factor Family AT1G01350 61.661 7.61e-136 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g0845 zf-C3HC4_3 8.6e-09 CL0229