Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0839 ATGCTGGTAGAGACGAAGATCATGGACGATGGAGAAATTTCAAATGGTTTTCCTCAAAACCCAACTGATCCTGAAGCAGAAGTCATCGCTTTATCGCCAAAGACTCTAATGGCGACTAATAGATTTCTGTGTGAAATTTGTGGGAAGGGATTTCAAAGGGATCAAAATCTGCAACTTCATCGACGTGGGCATAACCTTCCATGGAAGCTGAAGCAGAGGACGAGCAAAGAAGTGAGGAAGCGAGTTTATGTGTGCCCAGAAAAAAGCTGCGTCCACAACCACCCTTCAAGAGCTCTGGGAGATTTAACTGGGATAAAAAAGCACTTTTGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCCCACTCTAAAACCTGTGGCACCAGAGAATACAAATGTGACTGTGGCACCATCTTTTCACGGAGGGATAGTTTCATCACTCATAGGGCATTCTGTGATGCCTTGGCAGAAGAAACAGCAAGAGTAAACGCAGCATCCAACATGAACAACTCAACGTTAGGGAGCAACATCAGTTACAACATCATGGGAACTTCCCTTGGTTCCCTAGGGCCTAGCATGGCAACCCATTTTCCTTCAATCTTCAAGCCAATTTCAAGCCCTATCCATGATGAAACAAATAATATTCAAACATCAAGGGGGCTTTCCCTGTGGAATATGGGTCAAGGGCCTCAATCTCATGATCAGATTTCAATGGCTAATGGTAATAATAATCTGCATGAGATTCATCAACTTGGGTATGGGAACCCCCCTCCACCTGCTTCTAATTATCAGCTAAATTGGGTGTTTGGAAATAAGCTTATTTCTTCCTCCAATCAAGAGCTAATAAGCACATCAAACCAGCTGATAAGTGTTCCTTCCTCGTATAGCTCCCAACACAATCATCAATCCCACCAAACAACCTCAGCAAACATGTCAGCCACAGCTTTGTTACAAAAAGCTGCTGAAATTGGAGCAACTTCCACTGACCCTTCATTCCTTGGTAGCTTAGGGTTGAAATGCAGTAGCAACACTAGTCAAGGTGGTCAAGACGATCATGGGAACAACGTCAAATATTGTGGGATGTACGGTTCAAGCTCAGTACTCACTAGCCTTAATGGAAGTGATCAGACAGAGAACTCAGCAAGTGATTTGTCACAAATGCACCCTGCAAAACGCAGGCAAGTACAGAATGATGAAAGTGCAGGAGGGGGGCAAACTCGGGATTTCCTTGGCGTGGGTGTGCAAACCCTTTGCCACCCTTCATCAATCAACGGATGGATTTGA 1326 0.448 MLVETKIMDDGEISNGFPQNPTDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHNHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNMNNSTLGSNISYNIMGTSLGSLGPSMATHFPSIFKPISSPIHDETNNIQTSRGLSLWNMGQGPQSHDQISMANGNNNLHEIHQLGYGNPPPPASNYQLNWVFGNKLISSSNQELISTSNQLISVPSSYSSQHNHQSHQTTSANMSATALLQKAAEIGATSTDPSFLGSLGLKCSSNTSQGGQDDHGNNVKYCGMYGSSSVLTSLNGSDQTENSASDLSQMHPAKRRQVQNDESAGGGQTRDFLGVGVQTLCHPSSINGWI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0839 441 SMART c2h2final6 118 138 IPR013087 -
Glsi04g0839 441 SMART c2h2final6 83 113 IPR013087 -
Glsi04g0839 441 SMART c2h2final6 42 64 IPR013087 -
Glsi04g0839 441 FunFam protein indeterminate-domain 12-like 21 89 - -
Glsi04g0839 441 SUPERFAMILY beta-beta-alpha zinc fingers 41 138 IPR036236 -
Glsi04g0839 441 Gene3D Classic Zinc Finger 75 166 - -
Glsi04g0839 441 Gene3D Classic Zinc Finger 38 65 - -
Glsi04g0839 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 64 IPR013087 -
Glsi04g0839 441 FunFam protein indeterminate-domain 5, chloroplastic-like 96 175 - -
Glsi04g0839 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 429 IPR031140 -
Glsi04g0839 441 MobiDBLite consensus disorder prediction 384 421 - -
Glsi04g0839 441 MobiDBLite consensus disorder prediction 384 405 - -
Glsi04g0839 441 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0839 Glsi-ChrGlsi04 6013075 6015216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0839 21 441 IDZ Gene Family AT1G03840 53.750 2.50e-152 440
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi04g0839 None None None