Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0834 ATGGAGGCCGGTTCAGAAGCAGAGAAGAAAAAGCCTACTGAGGGTGACAACAAGACCAAGCGCAAAATGAAGACTGCTCGGCAGTTGGAGATTCTGGAGAAAACATATGCTGCGGACGCGTACCCATCCGAGGCGTTGAGAGCAGAGCTGTCGATGGAATTGGGTCTTTCTGATCGTCAACTACAGATGTGGTTTTGTCACCGTAGGTTAAAGGACAGAAAGGCACCAGCGGCAAAGAAGCCGCGAAATGATTCACCCCCTGGAGCGGTGACTCCAACGCCAGTGGGTGATGGTGTTGAGCATATGATAATGGGCGATGCCGGGCACGAGCGTGGTTCAGTTTCTGGGGTAAGGGCATTCGGTCATATGGATCCACGGCGAGTTGTCCCACGACCTGGGATAGCCTTTCCTAGAATTGGAGGGGGATTGCCAGCATTGGAGAGTTACTATGAACCACATCAATCCATATCTGAGTTGAGAGCTATTGCATTCGTGGAAGCACAGTTAGGGGAGCCATTAAGAGAGGACGGGCCAATTCTGGGGATGGAATTTGATCCCTTGCCACCGGGTGCTTTTGGTGCACCGATAGGGGCAATGACAATGGGGCAGCATAGGCAGTTGGGAAGGCCTTTTGGGGCAAAAATTTATGAACGACTGGATAAGGGTGTTTCAAAGACTCTCCATGAATATCAATTTATTCCTGAGCAGCCCACTGTTAGAAATGATACATGTGACTATGAAAGAGTTGCCTCTTCTAGCCACTACAGTTCTCTTGATGGTATTCCACATACAAGGACTTTATTATCCAGCAGGCGACCATTATCTAATGAGAATGAAACTGCTTCCCATGGATATGGATATCATGTTCAGATGCCAGGGTTAAATCTTTTGTCTCAGCAAGGCAGGCAGAATCAGCTTTTACCTTCTGCTTCTGGAGAAAATGATAATGTTCCAAGGAAGAACCCATTTGTTGATGTGGCTGTTGACACTCATATTGGGGCTCACCCACTAACTCAGGTCGACAGCTCATTAATGCCATCTGACAGGAAGGTTACCCATGAAGAGGAAATTTCTCGGTTTCAGAGGAAGCGGAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAGGCACAAGAGAAAAAAGTCAGAAAAGAGCTTGAGAAGCAGGATATTTTAAGGCGAAAGAGAGAAGAGCAAATAAAGAAAGAGATGGAGAGGCAGGAACGTGAAAGGCGGAAGGAAGAGGAAAGGCTTTTTCGTGAAAGACAGAAAGAGGAAGAGAGATACCAAAGAGAACAGAGGCGTGAACTGGAGAGGAGGGAGAAGATTTTGCAGAAGGAGTCAATGAGAGCTGAGAAAAGGAAACAGAAGGAAGAGCTACGCAGGGAGAAAGAGGCAGCAAGGATCAAAGCAGCCAATGAGAGAGCAATTGCTCGCAGAATGGCCAAAGAGTCAATGGAACCAATTGAAGATGAACGTCTAGAACTTATGGAATTAGCTGCATCCAAGAAGGGGCTTTCTTCAACACTGTCTCTTGACTATGACACTCTGCAGAATCTTGAATCATTTAGAGATGGGCGGCCTTCATTCCCACCTAAGTCTGTTCTGTTGAAAAGGCCTTTCTCAATTCAACCTTGGTTGGATTCTGAGGAGAATGTAGGAAATCTTCTGATGGTTTGGAGGTTCCTGATCTCTTTTGCAGATGTTCTTGGGATGTGGCCATTCACCTTGGATGAATTTATACAAGCTTTCCATGACCATGATCCAAGGTTGTTAGGTGAGATTCATATTGCTCTTCTGAGGTCCATTATAAAAGATATTGAAGATGTTGTGAGAACACCTACTGGGTTAGGAGTTAATCAACACAGTGCTGCCAACCCTAGTGGGGGTCATCCACAAGTAGTTGAAGGGGGTAATGATGGTGAAGATATAATTTCTTATCTACGCAGTGGAGCAGCAGTTGAAAATGCTGTTGCTATCATGCAAGAAAAGGGATTATCTAACCCAAGAAGATCTAGACATCGCTTGACGCCGGGAACTGTTAAGTTTGCAGCATTTCATGTCCTATCTCTTGAAGGAAGCAAGGGCCTTACTATATTGGAAGTTGCAGACAAGATTCAGAAATCTGGACTTCGTGATCTAAGAACAAGCAAAACACCAGAGGCTTCTATAGCTGCTGCTTTGTCCAGGGACACAAAGCTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTTCTGCATATAGAAAGGACCCGGCTGATGGTGAGGCAATTCTCTCAGCTGCCAGGGAAAGAATCAGGATATTCAAAAACGGATTTGTGGATGTAGAAGAGCCAGATGATGGTGAAAGGGATGAAGATTCTGAAATTGATATGGCAGAAGATCCTGAGGTTGATGATTTAGGTACTGAAACAAATAATAATGAGGAGGCTCCTAACTTAATAGAATTTAGTGCAAACACTGTAGTTAAGAGTGGAGAGGACATTGGTGAAATTTTGCAAACTCCTGATGGTTGCTGTGGGCAAATGAATGAGGGTTTAGCTTCAATTGTTGCCGAAGGATTTAATGCAGTTAAAGATGCTAGTACCTCTCAGGAAATTGCTGGTAGTAGCAATGATGTAACTAATCCTGATGTGGAAGACACCAGTATTGATGAAAGTAATCCAGGTGAACCATGGGTTGAAGGGCTTATGGAAGGAGATTATTCAGCTCTTAGTGTCGAGGAACGCCTTAATGCTCTTGTTGCTTTGGTTGGTGTGGCAATTGAGGGAAATTCAATTCGTGTTGTTCTAGAGGAGCGTCTAGAAGCAGCAAATGGTTTGAAGAAGCAGATGTGGGCAGAGGCTCAGCTTGATAAACACCGTATCAAAGATGACTACTTTTTGAAGATGCATTCTGTCCCTTGTATGGGCAGGAAGAATGAACTAACTCTTACAGTTCCATCAATTGAGGGTAAACAGAGCCCTTTGCTTAATGTTGATGACAAAAATGACAAGCCATTGCTAAATCCTCTTGCCCAGCAAGTACAGCTAAATGATGTACTGGTCAATCAGAGCAATCTTCAGAGTTTCGCTTCGGAAGGGAACATGCAAATGCAAGATTATTCTGCTGTCCCAGATAATTATTCTTATCAACAATTGGGATATGGTGCTGAAAAGTCAAGGTCAAATTTCAAATCATACATTGGTCACCTAGCAGAAGAAATTTATATGTATAGGTCATTGCCTCTTGGTTTGGATCGGAGACGTAATCGATACTGGCAGTTCATTACATGTGCTTCTCAAAATGATCCAGGCTGTGGCAGGATTTTTGTGGAGTTGCATGATAGTCATTGGAGGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTCTTGGCATCTTTGGATGTGCGTGGGATAAGGGAATTCCATTTGCACATGATGTTGCAAAGAATTGAGACGTCCTTCAAGGAATCTGTTGGAAGGAATAACATGAGAAGGCAAAATGGAGACACTGTCAATACAGAAGCTGTTGAAATGGCTACAGAGCAAGATTCAGTTGATAATTTTGACAGCCCTACTTCTGTGTGTATTGCTAATTCAGATGTCTCAGAGACCTCAACATCTTTTATGGTTCAGCTAGGAAGAAATTATTCTGATAACAAAGATGCTTTAAGGAGATACCAGGACTTTGAAAAATGGATGCTGAAGGAATGCCTAAATTCCTCTCTATTATGTGCATTGAAGTGTGGGAAGAGAAGGTGCAGCCAATTGCTGGGCATGTGTGATTACTGCCATGAAATCTATTTATCTGAAGAAATCCCTTGTCCTTCTTGCCATAGAACCTTTCGTACCTGTAAGAGCAACTTAAGCTCTTCTGAACATATGGCTCACTATGAAGGAAAAATGAAGAAGACCACTGATTATATATTTAATGTTTCACCATCTTCTCCATTGAGGATGAGATTGCTCAAAGTGCTGTTGTCAATTGTTGAGGTTTCCATTCCTGAAGAAGCTCTTAAACCTTTTTGGACAGACAGCTACCGGAAGTCTTGGAGTACAAAGCTGCACGCTTCTTCATCTACTGAAGACCTGCTTGAGGTTGTTGTTTGTCTTGAGTCTATAGAGCTTGATTTGGAACTTCCAGGCATTAATATTTTTACACCAATTGTCTCAAGTTTAAATATTCTACTTTTGGCTCAGGGTATAACATTGACTGTACTGGAGGGTGCTATAAAGAGGGATTATTTGGCTTCAAACTTCAAAACGACCAGTGAGCTGTTGGGTTCTGTTATTTCTTCTGGATGTCCCAATAATGATTTCATAGGAGCTGAAAGAATACCTGTACTGCCTTGGGTGCCTCATACAACAGCTGCTGTGGTGCTAAGGCTCTTGGAACTTGACATGTCCACCTTTTACACCTTACAGCAGAAGCTGGAGTCTGAAAAGGACAAGACAATTGGGGATGTTATGAAGTTTCACTCAAAATATGCTTCTGCCAAGAATTCCCTAGATGCGGGTGCAGCTGAAACTTCTCATCTGGCTGAACATGACTGGGTTGATCTAGGTTCTGGATTTGCAAGCTACAGTAGAGGACAAAGGACCCGTGGACAGGGCCGTGGTCGTTCTCGTGGTGTGAGATCACAGGGAAGGGTCATCAATGCAAGATCTGAATTTAAAAAAAGAGTTACTGCCACTAGCAGCAGGAGACTGGGACAGGTACTGGGATGGAAAGGAAGATCACGAGGACGTGGAGGGAATCGACGTGCTCGTCGAAGCATTAGAAGAAAGCAGAAACCAGCAGCTAAGGTGCATGAGATCAGTGGCCAGAGGGATTCTCCCAAAGAGAAATCAGCTGGTATTTTTGTCGGGGAGGAAACTAATGAAGTTCAAGCCGTTGGTTTTGAAATGGAATCTGCCGGAAATGCTAGTAGTTCAGGGCAATCTGACTATGAGGATGATAATTATCAAGTAACAGGTGTCGATTATGATTATCTGGTGGATAATAATGATGGCTATGGGGGTGGATTTAGTGGGAAGTCTGAGAACATAGTAGAAGGGAGTGATTATAATGTAGATGATGAGGAAGATGAGGATATTGATGAGGATGATGATGAGCAGGTCGATGTTGATGTTGAAGACTACATAAATGGGGACTCAGATATAGAGGAGAACGGGGAAGATGCAGGGCAAAACATGGATCCAAATGGGTTGCACTCTACATCGTCAGACTACAGTGATGACTAA 5229 0.4356 MEAGSEAEKKKPTEGDNKTKRKMKTARQLEILEKTYAADAYPSEALRAELSMELGLSDRQLQMWFCHRRLKDRKAPAAKKPRNDSPPGAVTPTPVGDGVEHMIMGDAGHERGSVSGVRAFGHMDPRRVVPRPGIAFPRIGGGLPALESYYEPHQSISELRAIAFVEAQLGEPLREDGPILGMEFDPLPPGAFGAPIGAMTMGQHRQLGRPFGAKIYERLDKGVSKTLHEYQFIPEQPTVRNDTCDYERVASSSHYSSLDGIPHTRTLLSSRRPLSNENETASHGYGYHVQMPGLNLLSQQGRQNQLLPSASGENDNVPRKNPFVDVAVDTHIGAHPLTQVDSSLMPSDRKVTHEEEISRFQRKRKNEEARMQRELEAQEKKVRKELEKQDILRRKREEQIKKEMERQERERRKEEERLFRERQKEEERYQREQRRELERREKILQKESMRAEKRKQKEELRREKEAARIKAANERAIARRMAKESMEPIEDERLELMELAASKKGLSSTLSLDYDTLQNLESFRDGRPSFPPKSVLLKRPFSIQPWLDSEENVGNLLMVWRFLISFADVLGMWPFTLDEFIQAFHDHDPRLLGEIHIALLRSIIKDIEDVVRTPTGLGVNQHSAANPSGGHPQVVEGGNDGEDIISYLRSGAAVENAVAIMQEKGLSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILEVADKIQKSGLRDLRTSKTPEASIAAALSRDTKLFERTAPSTYCVRSAYRKDPADGEAILSAARERIRIFKNGFVDVEEPDDGERDEDSEIDMAEDPEVDDLGTETNNNEEAPNLIEFSANTVVKSGEDIGEILQTPDGCCGQMNEGLASIVAEGFNAVKDASTSQEIAGSSNDVTNPDVEDTSIDESNPGEPWVEGLMEGDYSALSVEERLNALVALVGVAIEGNSIRVVLEERLEAANGLKKQMWAEAQLDKHRIKDDYFLKMHSVPCMGRKNELTLTVPSIEGKQSPLLNVDDKNDKPLLNPLAQQVQLNDVLVNQSNLQSFASEGNMQMQDYSAVPDNYSYQQLGYGAEKSRSNFKSYIGHLAEEIYMYRSLPLGLDRRRNRYWQFITCASQNDPGCGRIFVELHDSHWRLIDSEEGFDALLASLDVRGIREFHLHMMLQRIETSFKESVGRNNMRRQNGDTVNTEAVEMATEQDSVDNFDSPTSVCIANSDVSETSTSFMVQLGRNYSDNKDALRRYQDFEKWMLKECLNSSLLCALKCGKRRCSQLLGMCDYCHEIYLSEEIPCPSCHRTFRTCKSNLSSSEHMAHYEGKMKKTTDYIFNVSPSSPLRMRLLKVLLSIVEVSIPEEALKPFWTDSYRKSWSTKLHASSSTEDLLEVVVCLESIELDLELPGINIFTPIVSSLNILLLAQGITLTVLEGAIKRDYLASNFKTTSELLGSVISSGCPNNDFIGAERIPVLPWVPHTTAAVVLRLLELDMSTFYTLQQKLESEKDKTIGDVMKFHSKYASAKNSLDAGAAETSHLAEHDWVDLGSGFASYSRGQRTRGQGRGRSRGVRSQGRVINARSEFKKRVTATSSRRLGQVLGWKGRSRGRGGNRRARRSIRRKQKPAAKVHEISGQRDSPKEKSAGIFVGEETNEVQAVGFEMESAGNASSSGQSDYEDDNYQVTGVDYDYLVDNNDGYGGGFSGKSENIVEGSDYNVDDEEDEDIDEDDDEQVDVDVEDYINGDSDIEENGEDAGQNMDPNGLHSTSSDYSDD 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0834 1742 Pfam DDT domain 551 606 IPR018501 -
Glsi04g0834 1742 SMART HOX_1 17 79 IPR001356 GO:0003677
Glsi04g0834 1742 Gene3D - 2 77 - -
Glsi04g0834 1742 ProSiteProfiles HARE-type HTH domain profile. 679 748 IPR007759 GO:0006355
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1571 1610 - -
Glsi04g0834 1742 CDD homeodomain 18 74 IPR001356 GO:0003677
Glsi04g0834 1742 ProSiteProfiles DDT domain profile. 550 609 IPR018501 -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 779 805 - -
Glsi04g0834 1742 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 4 637 IPR044977 GO:0006357
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 347 377 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 864 890 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1728 1742 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1682 1722 - -
Glsi04g0834 1742 SMART testlast3 550 609 IPR018501 -
Glsi04g0834 1742 Coils Coil 350 477 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 340 377 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 864 884 - -
Glsi04g0834 1742 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1074 1146 IPR028941 -
Glsi04g0834 1742 SUPERFAMILY Homeodomain-like 13 74 IPR009057 -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 402 435 - -
Glsi04g0834 1742 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1524 1544 - -
Glsi04g0834 1742 Pfam Homeodomain 18 74 IPR001356 GO:0003677
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1 26 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 777 809 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1667 1742 - -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 1576 1593 - -
Glsi04g0834 1742 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 891 933 IPR028942 -
Glsi04g0834 1742 MobiDBLite consensus disorder prediction 73 97 - -
Glsi04g0834 1742 Pfam HB1, ASXL, restriction endonuclease HTH domain 679 747 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0834 Glsi-ChrGlsi04 5955327 5968975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0834 1 1697 Homeobox Transcription Factor Family AT5G44180 45.127 0.0 1256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Glsi04g0834 WSD 5.5e-13 No_clan