Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0831 ATGCTTGCGGTGTCACCTTTGAGGAGCACCAAAGATGAAGGCCAAGGAGAGATGGAGAGATTCTCGATCGCTGATGATGGTGACTTCGCGGGTATTTCTGATGGAAATTTATTGGAAAGCATTAATTTTGATGATCTTTTTTTGGATATCAACGTTGACGGAGATGTGTTGCCGGATTTGGAGATGGACCCGGAAATCTTCGCTGAGTTCTCCGTCAGCGGCGGAGAGGAGTCGTCGGAGATGAACTCAGTGGAAAACATTAATCAAGTTGATCATCAGAATAATATTATAACTACCACGAAGAAAGAAGATGAAGAAGATTACAATAAAGTTTCTTCAGCTTCGAATTCTGGGTCAAGTCGAGGAGAGAATGAATCTATAAAGGTGAAGCCATCGCAAAAGGAAACTGAGAAAGAGAAAGGAAGAAAATCGTCAGCTCAATCCAAAAATTCTCAAGGGAAGAGAAAAGTGAAGGTGGATTGGACACCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGACAAGGCAGTGCCTTCGAGGATTTTAGAGATTATGGGAATTGATTGTCTAACTCGCCATAACATTGCCAGCCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTGGCGCGTGAAGCTGAAGCAGCAAGCTGGAGTCAGAGAAGACAGATGTATGGAGGAGGGAAGAGAGACTTTAACCCATGGCTAGCACCGGCCACCTTGGGTTTCCCTCCCATGGCGCCACCGATGCACCATTTTAGACCCTTACATGTATGGGGGCACCCCACCATGGACCAGTCATTCATGCACATGTGGCCTAATGTACCACATCCTCCGTCTGTGCTACCGCCAGCGTGGGCACGGCCAACGGCTCCACCTCCTCCACCACCACCTCCAGACCCTTCATACTGGCACCCTCAGCACCAACAGGCTCCAAACGCACTAACACCAGGAACACCTTGTTTCCCACAACCTCTGACTACTATGAGATTTGGCTCTTCACCTGTCCCTGGAATCCCACCACATGCCATGTACAAAGTAGATCCGGGCATGGGCATCCCTGCCGGACAACCCGGCCCCCACCCCATCTTCGACTTCCACCCGTCGAAGGAGAGCATAGATGCAGCCATTACAGATGTTTTATCAAAACCATGGCAGCCACTACCTCTTGGCCTCAAAGCTCCAGCACTTGATAGCGTGTTGGGAGAATTACAGAGACAAGGAATTTCGAAAATCCCACCCTCTGCTGCTTGA 1272 0.4882 MLAVSPLRSTKDEGQGEMERFSIADDGDFAGISDGNLLESINFDDLFLDINVDGDVLPDLEMDPEIFAEFSVSGGEESSEMNSVENINQVDHQNNIITTTKKEDEEDYNKVSSASNSGSSRGENESIKVKPSQKETEKEKGRKSSAQSKNSQGKRKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWSQRRQMYGGGKRDFNPWLAPATLGFPPMAPPMHHFRPLHVWGHPTMDQSFMHMWPNVPHPPSVLPPAWARPTAPPPPPPPPDPSYWHPQHQQAPNALTPGTPCFPQPLTTMRFGSSPVPGIPPHAMYKVDPGMGIPAGQPGPHPIFDFHPSKESIDAAITDVLSKPWQPLPLGLKAPALDSVLGELQRQGISKIPPSAA 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0831 423 MobiDBLite consensus disorder prediction 290 311 - -
Glsi04g0831 423 MobiDBLite consensus disorder prediction 290 321 - -
Glsi04g0831 423 MobiDBLite consensus disorder prediction 111 126 - -
Glsi04g0831 423 Pfam Myb-like DNA-binding domain 159 208 IPR001005 -
Glsi04g0831 423 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 210 IPR006447 GO:0003677
Glsi04g0831 423 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 421 IPR044825 GO:0003700|GO:0045893
Glsi04g0831 423 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 153 212 IPR017930 -
Glsi04g0831 423 MobiDBLite consensus disorder prediction 75 96 - -
Glsi04g0831 423 Gene3D - 153 214 - -
Glsi04g0831 423 MobiDBLite consensus disorder prediction 127 145 - -
Glsi04g0831 423 MobiDBLite consensus disorder prediction 72 158 - -
Glsi04g0831 423 SUPERFAMILY Homeodomain-like 154 213 IPR009057 -
Glsi04g0831 423 FunFam Two-component response regulator 152 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0831 Glsi-ChrGlsi04 5915256 5918188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0831 1 374 G2-like Transcription Factor Family AT5G44190 40.750 2.06e-63 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi04g0831 Myb_DNA-binding 5.4e-08 CL0123