Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0819 ATGGTATGCCTGAGATTTGATATGGTTGCCAATAAAAGATTGGAATTTTGTTTGTATAAGAGGAGGGGGCTAGGGTTTCTATTGCAGATTGTATTTCGGTGTTGGGCTGTTCTGCTGTTTCTTCGTCCGGTGGCGGGTCTGAGACCGTTACGGGAGAGAACTCGTTCGTGGGGCGATGAGTGGCTAATCACAAGCAAAGACAAAAGTGAGTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAGAGGGACTTGGAAATTTTTAGATACCACAAATGGGTCTTCCAGATTTCCAGACATCAGGAAAACAAATGGCAATTCTGTAATTGAATTAGTTAGTGCACCCACAAAAATAACTGGTGTGCATTATGTTCAGGGCGTAATTATATTCCATGATGTGTTTGACAATGAATACAATGTTGGAGGTGCGCAAATCAGAGTAGAAGGTGTATATATATGGCCATTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGATGGAGAGTCAAATCAGGATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAATGTTCTCATCTCAAGTATTCCAAGAATCTTCACGAGATAAGATGTGGAGAAGAAAACAATCTCCAATATATGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGATTTCACGCCTGTCATCATCCAAAAATGATGGGGATCGTGACCTTTTCCACCTAGAAGGGTTAACAGAGAGTCCCTCAATGGATGACGATGGGGACTGCTTCTCACCTCTATTATTAAATGCAACTTCTGTTAACATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACCTTTGTCTCTTTCTTGCAAGTTCTTCTATTGATTCGGCAAATGGAGCATAGCAACACTCAATCTGGAGCTGCCAAGGTTTCAATATTTATGATTGGCCAGCAGGCAATCATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATACTTGTTGAGTCCTTGTTTAATGCTTTTGCAACTGCTGCTTTTTTCAAATTCGTGGTCTTCTCAATATTTGAGATGAGATATCTCCTTGCTATATGGAAGGCAAGTAGGCCTTTCAATAATGGGGAAGGTTGGGAGGCAATGAGGCGTGAGCTTTCAGTTTTATACAGTCGGTTCTATGGGATCCTGTTGGGAGGCATTCTGCTAATGTATGAGTTCCATAATTATTTGAGACCTATTGTTCTTCTTATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTGTTCGTGATTCACGAAAACCATTGCATCCTCATTATATATTAGGGATAACTGTCACTCGGCTAGCAATCCCATTATATATTTTTGGCTGCCCTAACAATTTCATGCGCATTGAACCACACAAGAACTGGTGTATTTGTTTGGCTGTATTTGTCGGACTTCAAGCTACAATTCTTGTACTTCAGCACTATCTTGGGTCCCGTTGGTTCATTCCTCGGCAGATTCTACCAGAGAAATACAGCTATTATAGGAGGTTCGATCAAGACTCAAGTCATTCTACAGACTGTGTTATTTGCATGACAGCCATTGATCTTCCACAGCGATCTAATGATTGCATGGTAACACCTTGCGATCATTTCTTCCACTCCGGCTGTTTGCAAAGATGGATGGACATAAAGATGGAGTGTCCTACTTGCCGGCGCCCACTGCCACCTGCCTAG 1731 0.4107 MVCLRFDMVANKRLEFCLYKRRGLGFLLQIVFRCWAVLLFLRPVAGLRPLRERTRSWGDEWLITSKDKSELGPFSQWNITGTYRGTWKFLDTTNGSSRFPDIRKTNGNSVIELVSAPTKITGVHYVQGVIIFHDVFDNEYNVGGAQIRVEGVYIWPFRQLRMVANSGKDGESNQDEDYILSNPYHLLGMFSSQVFQESSRDKMWRRKQSPIYDMEKHCNIEIAAQISRLSSSKNDGDRDLFHLEGLTESPSMDDDGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIFMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPFNNGEGWEAMRRELSVLYSRFYGILLGGILLMYEFHNYLRPIVLLMYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPHKNWCICLAVFVGLQATILVLQHYLGSRWFIPRQILPEKYSYYRRFDQDSSHSTDCVICMTAIDLPQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0819 576 SMART ringv_2 525 570 IPR011016 GO:0008270
Glsi04g0819 576 SUPERFAMILY RING/U-box 507 575 - -
Glsi04g0819 576 ProSiteProfiles Zinc finger RING-type profile. 526 570 IPR001841 -
Glsi04g0819 576 Pfam Ring finger domain 525 570 IPR001841 -
Glsi04g0819 576 SMART ring_2 526 569 IPR001841 -
Glsi04g0819 576 FunFam E3 ubiquitin-protein ligase, putative 512 576 - -
Glsi04g0819 576 CDD RING-H2_TUL1-like 520 575 - -
Glsi04g0819 576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 512 576 IPR013083 -
Glsi04g0819 576 PANTHER RING ZINC FINGER PROTEIN 127 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0819 Glsi-ChrGlsi04 5814040 5825266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0819 517 574 C3H Transcription Factor Family AT1G53010 33.898 9.06e-08 50.8