Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0814 ATGGATGCTGGAAAAAATGATGGTTTTAAGCCAAAGATGGGGAACGAAAATTGGAAGGTGGTGAAGAGGGAGACCCCGGCGGATTATGAGGTGAAAAATGGGTTGCTGGAGGAGAATAAGACGAAGATAGGAGTGGATTGCGGTGGTGGTGGGTCTGGGAAGAAAGGCTCTAGTGCTATGCGGTGCTGTCAAGCGGAGAAGTGCTCCGCAGATCTCAGTGATGCTAAGCATTACCATTGGAGGCACAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTAGTGCTTGTGGGTGGCATACGACAACGATTTTGTCAGCAATGCAGCAGATTCCATGAGTTAGTTGAATTCGATGACTTGAAAAGAAGCTGTCGTAGGCGATTGGCTGGACACAATGAGCGGCGAAGAAAGAACTGTGAGTCTCAATCAGAAGGCTCAAGCCGCAAAGGTTCAAGCACTCGGTTGAAGGACACTGTTTGTGGGCTGGCTGACGATAGAGGGAGAATTCAGAAAACCATCCAAGAAAGTGCCACTTACAAACATTTCCAGATAAGATTAAGATAA 561 0.4759 MDAGKNDGFKPKMGNENWKVVKRETPADYEVKNGLLEENKTKIGVDCGGGGSGKKGSSAMRCCQAEKCSADLSDAKHYHWRHKVCEYHAKAQVVLVGGIRQRFCQQCSRFHELVEFDDLKRSCRRRLAGHNERRRKNCESQSEGSSRKGSSTRLKDTVCGLADDRGRIQKTIQESATYKHFQIRLR 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0814 186 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Glsi04g0814 186 MobiDBLite consensus disorder prediction 134 154 - -
Glsi04g0814 186 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Glsi04g0814 186 SUPERFAMILY SBT domain 61 140 IPR036893 GO:0003677|GO:0005634
Glsi04g0814 186 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 50 146 IPR044817 GO:0003677
Glsi04g0814 186 Pfam SBP domain 63 136 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0814 Glsi-ChrGlsi04 5798166 5799627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0814 61 184 SBP-box Gene Family AT3G15270 54.762 1.06e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi04g0814 SBP 7.8e-31 No_clan