Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g0812 | ATGCCTGCCCAGAAGCGGTCCTTGCCAGAGTCTCTGGACGATGGAGAGGCTTCACAACTCTACCACCAGCGCCATGCCAAGCAATCTCAGCGCGACCGAGAGCTAAGAGGAGAGGAACAACGGGAGGAGGAAGATGAGCAGGGGGAGCAGGAGGAACTAGGTAAAGGGGAAGAAGCTGGACAGCAGCACGAACAAGAAGAGGAGAAAGAAAAAGCTGAGGTGCCAAATTGGTTTTTGTCAACTGGGCACCGGTTTGGGTTCACGATCCTTCCAGTTCTGAAGTTTTTGTTTGTCTTGTCAGATTCTGAGGGAAGCCCATCTTCTGACCCTGAAGAAAAACCCGAATTTGTGTTTGTAGAACTTCCAGAAATTCGAAAAGATGTCCAATGTCCAATTTGCCTTGGTATTATCAAGAAGACACGAACTGTTATGGAATGCTTGCACCGGTTTTGCAGGGAATGCATTGACAAGTCAATGCGACTAGGGAATAATGAATGCCCAGCATGCCGCACGCATTGTGCCAGTCGTCGTTCTTTGAGAGATGATCCAAACTATGATTCTCTAATTGCAGCTCTATATCAAGATATTGAAAAATATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTAGTTCAGCGACAATCTGAAGCACTGGTTAAGAGACGTAGTAAAGATGCACCAGGTGCATTTGTGACAAGATCACAACGTAATCAACGGAATGTTCATTCCCGGAGACAAAACCATGGAATTGATCCTCAAGGATCAGAAGACAATGAGGAGGAAAATGAAAATAATGGAGAAAAAGACTCATCTTCCACTGATGAGCGGTGTTCAGAACTTAGGCATAGAAGGCGAAAGAGACGGACTAGAGTTCGTACTTCTCAGCCCTCATCATCAAGGGCAAGCCCTGATGGTGGATTTATAGATAGTGATATGGATATAATTAGAGTAAGTCGAGGAAATTTTTCAAGGCAGCTTTCAAAACCTCGAAAGCTTACTTGGGGAAGGGGTGGTTTTAGGAGTCACACACGGCATGGCAGTGGCAGTGGTAGCAATAGCAAGAACTCCCGCAGTGGTCGCTTGTCTAAGTTGGTTGATTATCTCAAAAGCTTAGATGAAAACACTAACGAGTTAGATGTCCATCTCATGCTTGTTTCTATGGAAAAAGAAACCATACCAAGTTTGCAGCAGCCACACCTTTGCTGTCGACCAACGTTGTCAGTCAAGCACCTTTGTGAATATGTTGCTCGTCAGACCCCATTGCCAGCTGAAGAAGTTGAGATATTGGCGGTTAAAGAATGCTGCAGTACCGCTCGTGATAAGTCAGCTGATGAGACTTCAACTTTGCTGCATGATGAGCTAACAGCGCTTATTGTAGATCCACGCAAAGATGAACTGGAAACTTTGCAAGTACATGAAACTTTGGCAGGGTTGAAGTCCAAATGCATATCTAAAAGAGAGCATTTGATTCTGGCATACAGGAGGAAGGAGACAATATAG | 1542 | 0.4481 | MPAQKRSLPESLDDGEASQLYHQRHAKQSQRDRELRGEEQREEEDEQGEQEELGKGEEAGQQHEQEEEKEKAEVPNWFLSTGHRFGFTILPVLKFLFVLSDSEGSPSSDPEEKPEFVFVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDSLIAALYQDIEKYEEEELEFREEEKNRNKQIQASIAKVVQRQSEALVKRRSKDAPGAFVTRSQRNQRNVHSRRQNHGIDPQGSEDNEEENENNGEKDSSSTDERCSELRHRRRKRRTRVRTSQPSSSRASPDGGFIDSDMDIIRVSRGNFSRQLSKPRKLTWGRGGFRSHTRHGSGSGSNSKNSRSGRLSKLVDYLKSLDENTNELDVHLMLVSMEKETIPSLQQPHLCCRPTLSVKHLCEYVARQTPLPAEEVEILAVKECCSTARDKSADETSTLLHDELTALIVDPRKDELETLQVHETLAGLKSKCISKREHLILAYRRKETI | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0812 | 513 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 124 | 193 | IPR013083 | - | |
| Glsi04g0812 | 513 | Pfam | Zinc finger, C3HC4 type (RING finger) | 129 | 169 | - | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 53 | 74 | - | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 9 | 40 | - | - | |
| Glsi04g0812 | 513 | ProSiteProfiles | Zinc finger RING-type profile. | 130 | 170 | IPR001841 | - | |
| Glsi04g0812 | 513 | SUPERFAMILY | RING/U-box | 117 | 201 | - | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 279 | 294 | - | - | |
| Glsi04g0812 | 513 | ProSitePatterns | Zinc finger RING-type signature. | 146 | 155 | IPR017907 | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 358 | 373 | - | - | |
| Glsi04g0812 | 513 | Coils | Coil | 189 | 227 | - | - | |
| Glsi04g0812 | 513 | PANTHER | OS11G0578200 PROTEIN | 1 | 511 | IPR044592 | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 1 | 75 | - | - | |
| Glsi04g0812 | 513 | CDD | RING-HC_RING1-like | 127 | 192 | - | - | |
| Glsi04g0812 | 513 | MobiDBLite | consensus disorder prediction | 231 | 373 | - | - | |
| Glsi04g0812 | 513 | SMART | ring_2 | 130 | 169 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g0812 | Glsi-ChrGlsi04 | 5785636 | 5792553 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0812 | 123 | 194 | C3H Transcription Factor Family | AT3G23060 | 34.667 | 2.39e-07 | 51.2 |