Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0809 ATGAGCGGTGTTTGTGCAGAGCATAAGTTCCATCCCTCCCACCAACTCCTTTCCCCCAAGAAACCCATGATCAGAGACGTTGATATTCCACCCAGGAAGCTCCTCACTCGCCGTGCCGGCGCTCACCACGACGTCGCTGACATGTACTCCGACTCGCCGCGTTTCTCCTCTTCCGACGAGACCCTTTTGCAGAAGTTCCTTCCCCACAACAACCTCGTGGAGGATGATGATTATCATTGTGACCCCTACTCTTCTGACCACTTCCGCATGTATGAATTCAAGGTCCGCCGGTGCACTCGCAGCCGGAGCCACGACTGGACTGACTGCCCCTTTGCTCATCCCGGCGAGAAAGCTCGCCGCCGTGACCCCAGAAAGTACCACTACTCCGGTACCGTCTGCTCTGAGTATCGCCGCGCCGGTGGATGCAGCCGTGGCGATAACTGTGAGTTTGCGCACGGGGTGTTTGAATGCTGGCTTCACCCAGCAAGGTACCGAACCGAGGCTTGCAAGGACGGGAAGAATTGTAAGCGAAAGGTATGCTTCTTCGCTCATACTCCTCGCCAACTCAGAATTCTGCCTGTGAATTCTTCAGCTGAAATTTCATGCAAGAACAAAAAATTTTTGAACCCCGCATCGGGATCGAACAATTGCTGTTTGTTTTGTCATTGTGCTGCTACTTCTTCCCCAACTTCCACACTGTTTGGCATGTCCCATTTATCCCCACCACTGTCGCCGTCTTCATCCTCCGTCTCACCACCTCTTTCGCCTATCAAACGCCTGTCTGCAAATGGGTTCTCGCCAATTTCTTGCTATAGTGATCGATTTGGAGTACCTGAGACACCCAGTGGGTTGAATCATGGGTTGTTGATGAGCTACAAAGAGGTGATCACTGACCTGATGAGCTCCTTAGAGGGTGTGAATTTCACTGAAGCTGCATCACCTGTAATTTCTGCCACTAAAACTCCAAATCTGTCTTGGCTTGATGTTTCTAATTTTAACTGTGATGATCATAAGCAGCAGCAGCAGTTTATTCTTTCACCATCTACATCTGGGTCTGCAAGCTTTCCCAATGAGAAATATCCAAGCAGGAAAATCTTCAGCAACGAGAGCAAGGTTGTGAACGATAATGGGCCTTCCTCTTCAGCCCCAGATCTCGGGTGGGTCAATGACTTGCTGATGTAG 1182 0.5059 MSGVCAEHKFHPSHQLLSPKKPMIRDVDIPPRKLLTRRAGAHHDVADMYSDSPRFSSSDETLLQKFLPHNNLVEDDDYHCDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGTVCSEYRRAGGCSRGDNCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSSAEISCKNKKFLNPASGSNNCCLFCHCAATSSPTSTLFGMSHLSPPLSPSSSSVSPPLSPIKRLSANGFSPISCYSDRFGVPETPSGLNHGLLMSYKEVITDLMSSLEGVNFTEAASPVISATKTPNLSWLDVSNFNCDDHKQQQQFILSPSTSGSASFPNEKYPSRKIFSNESKVVNDNGPSSSAPDLGWVNDLLM 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0809 393 PANTHER UNKEMPT FAMILY MEMBER 54 392 IPR045234 -
Glsi04g0809 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 153 IPR000571 GO:0046872
Glsi04g0809 393 SUPERFAMILY CCCH zinc finger 126 157 IPR036855 GO:0046872
Glsi04g0809 393 Gene3D - 123 201 - -
Glsi04g0809 393 ProSiteProfiles Zinc finger C3H1-type profile. 128 155 IPR000571 GO:0046872
Glsi04g0809 393 SMART c3hfinal6 127 154 IPR000571 GO:0046872
Glsi04g0809 393 SMART c3hfinal6 163 186 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0809 Glsi-ChrGlsi04 5769436 5770617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0809 74 267 C2H2 Transcription Factor Family AT5G12850 45.854 1.29e-49 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi04g0809 zf-CCCH 1.7e-07 CL0537