Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0808 ATGAAGCGTTACGTTTACATCAATGATGAAGAATCATCACATGATATCTACTGCGATAATCGCATATCAAACAGAAAATATACTGTACTTAATTTTCTTCCAAAAAATTTATGGGAACAGTTCAGCCGGTTCATGAATCAGTACTTTTTACTTATAGCTTGCCTGCAGCTATGGCCTCTCATTACTCCAGTAAATCCTGCCAGTACATGGGGTCCACTTATCTTCATTTTTGCAGTCTCTGCAACAAAAGAGGCTTGGGATGATTACAATAGATATCTTTCAGACAAGAAGGCAAATGAGAAGGGAGTCTGGGTTGTGAGCAAAGGCATTAAGAAACTTATCCAAGCCCAGGATATTCACGTAGGTACTATAGTATGGCTTCGTGAAAATGATGAAGTGCCTTGTGACCTTGTTTTGATTGGTACCTCTGATCCACAGGGACTTTGCTATATAGAGACTGCTGCGCTAGATGGTGAAACTGACCTGAAGACAAGGGTCATACCTTCTGCTTGCATGGGAATAGATGTTGAACTATTGCACAAAATCAAGGGTGTAGTTGAGTGCCCTAGTCCAGATAAAGACATCAGAAGATTTGATGCTAACATGCGGTTGTTCCCCCCATTTATTGATAATGATATGTGCCCTTTAACAATAAAAAACACCGTTCTTCAGTCATGTTACTTGCGAAACACTGAGTGGGCATGTGGAGTGTCTGTGTACACAGGTAATGAAACCAAGCTGGGGATGAGTAGGGGTATACCAGAACCAAAGCTCACTGCTATGGACGCCATGATTGACAAGTTGACTGGTGCTATATTTGTATTCCAAATTGTGGTTGTTATGGTTCTTGGTGTAGCGGGTAATGTTTGGAAGGACACAGAAGCGAAGAAACAATGGTATGTTCTTTACCCAAGTGAAGGCCTTTGGTTTGAACTATTGGTCATCCCTCTGCGATTCGAGCTTCTTTGTTCCATCATGATACCCATTTCAATTAAGGTATCTCTAGATCTGGTGAAGAGCTTGTATGCAAAATTTATTGATTGGGACCATCAGATGATTGACACAGAGACTGGTATTCCATCCCATGCAACAAATACAGCGATAAGCGAGGACCTGGGACAGGTTGAGTACATATTGACAGACAAAACAGGCACCCTGACTGAGAATAAGATGATATTCAAAAGATGTTGTATCAGTGGCATTTTCTATGGAAATGAGAATGGAGATGCATTGAAAGATGTAGAGCTTCTTAATGCTGTTGCTAGTGGCTCCCCTGATGTCGTACGATTTCTTACAATTATGGCTATATGTAATACTGTCATACCTACGCAAAGCAAAACTGGAGATATCTTGTATAAGGCACAGTCTCAGGATGAGGATGCTCTTGTCAATGCTGCTGCTCGGTTGCATATGGTTTTCTTCAATAAGAATGGAAATGTTCTTGAAGTTAAGTTCAATTCCTCAATACTTCATTATGAAATCCTGGAAACCCTAGAATTCACATCTGATAGGAAAAGAATGTCTTTAGTGGTGAAAGATTGCAAAAATGGCAAGATCCTTCTCCTATCAAAAGGAGCAGATGAGGCTATTCTTCCATATGCTTGTGCTGGGCAACAAACTCGGAATTTCATTGAAGCTGTGGAGCAATATGCTCACTTGGGACTACGTACGCTATGTTTGGCTTGGCGGGAATTGAAGGAAGATGAATATCAAGAATGGTCTTTAATGTTTAAAGAGGCCAGCAGCACTTTGGTTGATAGGGAGTGGAGAGTAGCTGAGGTCTGCCAAAGAGTAGAGCACAACTTGGAAGTTCTTGGTGTAACAGCAATAGAAGATCATTTACAGGATGCAGTGCCTGAAACAATAGAATCACTAAGAAAAGCTGGAATAAATTTTTGGATGCTAACTGGAGACAAGCAGAATACTGCTATACAAATTGCCCTGTCATGCAATTTTATTTCCCCAGAGCCAAAGGGACAGCTTCTATCAATTGATGGCAAAACTGAAGATGAGGTTCGTAGAAGTTTGGAGAGAGTGCTTCTTACAATGAGGATAACTACCTCAGAACCTAAGGATGTGGCTTTTGTCGTTGATGGCTGGGCTCTTGAGATTGTGCTTAACCACTACCGAAAAGCTTTTACTGAGCTGGCAATTTTGTCAAGGACTGCTATATGTTGCCGTGTGACACCATCTCAAAAAGCACAGCTTGTAGATCTCTTAAAATCATGTGATTATAGAACACTGGCAATTGGTGATGGTGGGAATGATGTAAGGATGATACAAACAGCTGACATAGGTGTTGGCATTAGTGGGAGAGAAGGATTACAAGCTGCAAGAGCAGCTGATTACAGTATTGGAAAGTTCAGGTTCCTCAAAAGATTAATTCTTGTCCATGGACGATACTCGTACAACCGTACAGCATTTCTATCTCAATATTCATTCTATAAGTCCCTACTGATATGTTTCATCCAAATCTTTTTTTCATTTATTTCAGGGGTCTCTGGAACCAGCCTTTTCAATTCTGTTAGCTTGATGGCTTATAATGTTTTCTACACTAGTGTACCTGTTCTAGTCAGTGTCCTTGACAAAGATCTTGATGAAAAAACTGTGATGCAGCATCCTCAAATTCTATTTTATTGCCAAGCTGGGAGGCTTCTAAATCCTAGTACTTTTGCTGGATGGTTTGGGCGATCTCTCTTCCATGCAATAGTTGTATTTGTGATAAGCATACATGCCTATGCTTATGAGAAAAGTGAAATGGAGGAGGTATCGATGGTTGCACTCTCCAGTTGTATATGGTTGCAGGCTTTTGTAGTTACAATGGAGACCAATTCCTTTACGGTATTGCAACATGTTGCTATATGGGGTAATTTGGCTGCCTTTTATGTCATCAACTGGATCTTCAGTGCCATTCCATCATCAGGGATGTATACAATTATGTTTCGGTTGTGCCGACAACCGTCATATTGGATAACAGTATTCCTCACAGTTGCAGCTGGGATGGGTCCAATTCTAGCCATCAAGTACTTCCGATTCACATATAGACCAAGCAAAATAAATACTCTTCAGCAGGCTGAACGTCTGGGTGGGCCTATTTTGTCTCTCGGCCCAATTGAGCCTCAGCCCAGATCTATAGAGAAAGATGTTTCTTCCTTGTCAATATCGCAACCCAAAAACAGAAATCCTGTGCATGAACCTCTGTTATCGGATTCTCCAAATTCCACCAGAAGGTCTTTTGGACCAGGAACCCCATTTGATTTTTTTCAGTCGCAGTCAAGATTATCCTTGTCAAGCTACACAAGAAATTGCAAGGACAACTAA 3321 0.4092 MKRYVYINDEESSHDIYCDNRISNRKYTVLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKGVWVVSKGIKKLIQAQDIHVGTIVWLRENDEVPCDLVLIGTSDPQGLCYIETAALDGETDLKTRVIPSACMGIDVELLHKIKGVVECPSPDKDIRRFDANMRLFPPFIDNDMCPLTIKNTVLQSCYLRNTEWACGVSVYTGNETKLGMSRGIPEPKLTAMDAMIDKLTGAIFVFQIVVVMVLGVAGNVWKDTEAKKQWYVLYPSEGLWFELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDHQMIDTETGIPSHATNTAISEDLGQVEYILTDKTGTLTENKMIFKRCCISGIFYGNENGDALKDVELLNAVASGSPDVVRFLTIMAICNTVIPTQSKTGDILYKAQSQDEDALVNAAARLHMVFFNKNGNVLEVKFNSSILHYEILETLEFTSDRKRMSLVVKDCKNGKILLLSKGADEAILPYACAGQQTRNFIEAVEQYAHLGLRTLCLAWRELKEDEYQEWSLMFKEASSTLVDREWRVAEVCQRVEHNLEVLGVTAIEDHLQDAVPETIESLRKAGINFWMLTGDKQNTAIQIALSCNFISPEPKGQLLSIDGKTEDEVRRSLERVLLTMRITTSEPKDVAFVVDGWALEIVLNHYRKAFTELAILSRTAICCRVTPSQKAQLVDLLKSCDYRTLAIGDGGNDVRMIQTADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQIFFSFISGVSGTSLFNSVSLMAYNVFYTSVPVLVSVLDKDLDEKTVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAIVVFVISIHAYAYEKSEMEEVSMVALSSCIWLQAFVVTMETNSFTVLQHVAIWGNLAAFYVINWIFSAIPSSGMYTIMFRLCRQPSYWITVFLTVAAGMGPILAIKYFRFTYRPSKINTLQQAERLGGPILSLGPIEPQPRSIEKDVSSLSISQPKNRNPVHEPLLSDSPNSTRRSFGPGTPFDFFQSQSRLSLSSYTRNCKDN 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0808 1106 Gene3D - 602 790 IPR023214 -
Glsi04g0808 1106 ProSitePatterns E1-E2 ATPases phosphorylation site. 381 387 IPR018303 -
Glsi04g0808 1106 SUPERFAMILY Calcium ATPase, transduction domain A 102 248 IPR008250 -
Glsi04g0808 1106 FunFam Phospholipid-transporting ATPase 449 592 - -
Glsi04g0808 1106 Pfam Phospholipid-translocating P-type ATPase C-terminal 778 1017 IPR032630 -
Glsi04g0808 1106 FunFam Phospholipid-transporting ATPase 602 789 - -
Glsi04g0808 1106 Gene3D - 444 583 IPR023299 GO:0000166
Glsi04g0808 1106 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 4 1027 - -
Glsi04g0808 1106 Pfam E1-E2 ATPase 101 293 - -
Glsi04g0808 1106 NCBIfam HAD-IC family P-type ATPase 716 834 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi04g0808 1106 FunFam Phospholipid-transporting ATPase 75 251 - -
Glsi04g0808 1106 SFLD Haloacid Dehalogenase 362 801 - -
Glsi04g0808 1106 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 386 572 IPR023299 GO:0000166
Glsi04g0808 1106 Gene3D - 75 251 - -
Glsi04g0808 1106 Pfam Cation transport ATPase (P-type) 436 532 - -
Glsi04g0808 1106 SUPERFAMILY HAD-like 374 805 IPR036412 -
Glsi04g0808 1106 PRINTS P-type cation-transporting ATPase superfamily signature 379 393 - -
Glsi04g0808 1106 PRINTS P-type cation-transporting ATPase superfamily signature 750 769 - -
Glsi04g0808 1106 PRINTS P-type cation-transporting ATPase superfamily signature 152 166 - -
Glsi04g0808 1106 PRINTS P-type cation-transporting ATPase superfamily signature 628 638 - -
Glsi04g0808 1106 Pfam Phospholipid-translocating ATPase N-terminal 5 70 IPR032631 -
Glsi04g0808 1106 NCBIfam phospholipid-translocating P-type ATPase 425 1023 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Glsi04g0808 1106 CDD P-type_ATPase_APLT 19 907 - -
Glsi04g0808 1106 MobiDBLite consensus disorder prediction 1049 1082 - -
Glsi04g0808 1106 SUPERFAMILY Calcium ATPase, transmembrane domain M 14 1016 IPR023298 -
Glsi04g0808 1106 SFLD p-type atpase 362 801 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0808 Glsi-ChrGlsi04 5748963 5765487 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0808 1 1106 Primary Pumps ATPases AT5G44240 85.005 0.0 1996