Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0807 ATGCGAAACCCCACAATGTCTGTGAAGGAAAGGCTGGGTCTTAAGAACAATAAGCCAAACAATGCCAAGGAGGTTCATTACAGAGGTGTTCGGAAGAGGCCTTGGGGGCGTTATGCCGCCGAAATCCGAGATCCCGGCAAGAAGAGCCGCGTTTGGTTGGGGACCTTCGACACGGCGGAGGAAGCCGCCAGGGCCTATGACACTGCCGCCAGGCAATTCCGTGGCCCCAAGGCCAAGACTAACTTCCCTTTGCTTAGCGAGAACGTTCTCAACAACAGCAATAACCGGAGCCCCAGCGAGACCAGCACCGTCGAGTCATCCAGCCGTGATGGCTCCGACCGTGAGATCAAGCGCCGGTGCGACATCGGTCACGTCGTGGATCGGTTTCCGTTTCTTCCACTGCAGTCCCACCCCACGGCATTTGGCGGCGGTGGGTGTGTCCCCGGGGGCCTGGTAGCTCCGGCGCGCCCTGTTTTTATTTTTGACCCGGCTGGTAGGGCCGAGTTTGTGGGCCAGCGTTATCCCGTCCGATTCGAGCCGGCGCCGGTTGAGTTAAAGACCAAATTGGGTTGTGGGGCCCAGAGTGACTCTGATTCATCCTCCGTCGTTGATTGTCAGCCGAAAAAAGCTATCAATCTCGATCTCAACCTGGCTCCTCCAATGGACGATTAG 672 0.5759 MRNPTMSVKERLGLKNNKPNNAKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGPKAKTNFPLLSENVLNNSNNRSPSETSTVESSSRDGSDREIKRRCDIGHVVDRFPFLPLQSHPTAFGGGGCVPGGLVAPARPVFIFDPAGRAEFVGQRYPVRFEPAPVELKTKLGCGAQSDSDSSSVVDCQPKKAINLDLNLAPPMDD 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0807 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 173 - -
Glsi04g0807 223 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 Pfam AP2 domain 26 75 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 MobiDBLite consensus disorder prediction 88 106 - -
Glsi04g0807 223 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 MobiDBLite consensus disorder prediction 88 116 - -
Glsi04g0807 223 FunFam Ethylene-responsive transcription factor 2 25 84 - -
Glsi04g0807 223 MobiDBLite consensus disorder prediction 1 23 - -
Glsi04g0807 223 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Glsi04g0807 223 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 CDD AP2 26 83 IPR001471 GO:0003700|GO:0006355
Glsi04g0807 223 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0807 Glsi-ChrGlsi04 5741026 5741697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0807 23 223 AP2-EREBP Transcription Factor Family AT5G44210 47.573 1.41e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi04g0807 AP2 4.1e-15 CL0081