Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0800 ATGGCTTCGTTGTTTAAGGATCTATCCAGGCTTTCAGCCTATCGAGATAGAAGATTTCCTGGAACACAAGAGGAATTTGAACAGGCGCTCCTTGCATCAACAACAGTTTATGTGGGAAATATGTCCTTCTACACAACAGAAGAGCAAGTTTATGAAATTTTTTCCCGAGCTGGAGAAATTAAGAAAATCATTATGGGATTGGATAAGAACTCAAAAACTCCCTGTGGCTTTTGCTTTGTTTTATACTACTCTCGAGAAGATACTGAGGATGCTGTCAAATACATAAGTGGGACAATACTTGATGACCGTCCTATTCGTGTAGATTTTGACTGGGGATTCCAGGAAGGTAGACAATGGGGTCGTGGTCGTAGTGGGGGCCAGGTGCGTGACGAATATCGTGGTTATGGAAAATTAGTTCAGAAAGAGTTAGAAGCACAAAGGCAGCTCGTAGATTATGGTGCTGGTTCTTTGGGCTCTTTTCCACCAGCTATGCCACCGTCCTATGGTAGACATGGTGGAAGCCATGGTCATGGTGGTTCTTATCGGCATGGTAGAGATTCCTACAGGAAGAGACACAGAGATGATGACCGCCACACAAATGAATCTTCAAAAAGAACATCAGATCATGAATCTCGGAGGAACTCTGATCATGACTCTAGACCAATATCTGCTGCAATTGATACCAATTTTCCAGGCCAACTTCCTTTAGGGAATGGCACCATATCATCCAAAGGAGGAGTATTTGAAATGGTGGTTTGGGAAGCAAACGGAGAATATCCCATCTCTGATCCAAACTCTACGTCGTTAGAATTTGATGAAGATGGTAATTTAATTCTCCTCTCCTCACTTGGCCATGTGTGGTCCACAAATTTAACCTTAGACACGCCCATGCCAAATTTAACCGTACTAGGTGTGCTTGGCGATAATGGGAATTTTTTTCTAAGAGAAACATCCAACTCGTACAGTATAATATGGCAGAGTTTCAACCAACCTGCTGATACTTTGCTACCCGGAGCACGGTTTGGTATTGAAACAACCATGATGTCCTGGAACTATATAAATGACCCGTCGCCCGGATTCTTCTCTCTTGAGAATCACAGTAGGACTGATGTGCGGCTATGGAGGAATGGGACTAACAGCCAGGGGATCAATTATTTTTATGACTTTATTGGCGACTACATTGTAGTCCCCTCCTATAGTTTGGTTAGAAATGCGTTGGATGCAGAAGGGCAGCTCAAGCTATTTGTATGGCGGAACAGTCTCGAAGAATGGAAATTGCTTCTTTCGATACCACAAGACCTTTACAATACCTGTGCCTGTAAAGAATTTACTCAATTTAGTATCTGTGATCCCAGTAATCTGCCAGAGTGTCTTTGCATAAATGGACCCAATAGTCCAGTCTATTGGAATTTGCAGTTATACATTTGCACAAGGAGCACTCACTTGCTTTGCATCTACAGCACAAAAGACCAGTTCTGGGTTATACCTAAGACACGGTATCCATTGAATCCAGAATTTGTGCAAGTCAAGGATTCTGGTGATTGTCGATTGGCTTGCTTATCGAACTGTTCTTGTACATCTTATGCATATAATAACAAATGCTTCTTTTGGAAAGGAGCATTTGATTGCATACAGGAACTTTTATCAGATGAGGAGATTGGAGGAGATTTTTATGTCGAGTTGCAGCATCTGAGATAG 1698 0.4217 MASLFKDLSRLSAYRDRRFPGTQEEFEQALLASTTVYVGNMSFYTTEEQVYEIFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKYISGTILDDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRGYGKLVQKELEAQRQLVDYGAGSLGSFPPAMPPSYGRHGGSHGHGGSYRHGRDSYRKRHRDDDRHTNESSKRTSDHESRRNSDHDSRPISAAIDTNFPGQLPLGNGTISSKGGVFEMVVWEANGEYPISDPNSTSLEFDEDGNLILLSSLGHVWSTNLTLDTPMPNLTVLGVLGDNGNFFLRETSNSYSIIWQSFNQPADTLLPGARFGIETTMMSWNYINDPSPGFFSLENHSRTDVRLWRNGTNSQGINYFYDFIGDYIVVPSYSLVRNALDAEGQLKLFVWRNSLEEWKLLLSIPQDLYNTCACKEFTQFSICDPSNLPECLCINGPNSPVYWNLQLYICTRSTHLLCIYSTKDQFWVIPKTRYPLNPEFVQVKDSGDCRLACLSNCSCTSYAYNNKCFFWKGAFDCIQELLSDEEIGGDFYVELQHLR 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0800 565 CDD RRM_NCBP2 36 113 IPR034148 -
Glsi04g0800 565 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Glsi04g0800 565 SUPERFAMILY RNA-binding domain, RBD 27 136 IPR035979 GO:0003676
Glsi04g0800 565 Gene3D - 6 142 IPR012677 -
Glsi04g0800 565 Pfam PAN-like domain 484 540 IPR003609 -
Glsi04g0800 565 CDD PAN_AP_plant 487 561 - -
Glsi04g0800 565 Gene3D - 231 329 IPR036426 -
Glsi04g0800 565 SMART rrm1_1 35 108 IPR000504 GO:0003723
Glsi04g0800 565 Pfam D-mannose binding lectin 251 346 IPR001480 -
Glsi04g0800 565 SMART blect_4 203 331 IPR001480 -
Glsi04g0800 565 ProSiteProfiles PAN/Apple domain profile. 484 562 IPR003609 -
Glsi04g0800 565 MobiDBLite consensus disorder prediction 161 237 - -
Glsi04g0800 565 SMART ntp_6 487 561 IPR003609 -
Glsi04g0800 565 SUPERFAMILY alpha-D-mannose-specific plant lectins 251 349 IPR036426 -
Glsi04g0800 565 MobiDBLite consensus disorder prediction 179 220 - -
Glsi04g0800 565 FunFam Nuclear cap-binding protein subunit 2 4 142 - -
Glsi04g0800 565 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
Glsi04g0800 565 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 2 197 IPR027157 GO:0000339|GO:0005846|GO:0045292
Glsi04g0800 565 ProSiteProfiles Bulb-type lectin domain profile. 197 327 IPR001480 -
Glsi04g0800 565 Pfam S-locus glycoprotein domain 393 462 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0800 Glsi-ChrGlsi04 5685507 5692070 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0800 33 122 Eukaryotic Initiation Factors Gene Family AT1G49760 26.667 5.36e-06 47.4