Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi04g0795 | ATGGATCTGCAGCAGCAGGGAAGTCAATCTTCTTCTTCCGCCAAACTTGAGAGGAGGGTCATAGAGAAAAACAGAAGAAACCAGATGAAGATCCTTTACTCTAAACTCTACTCTCTTCTCCCAAACTATAACCCCAAGGAAACATTGCCACTTCCTGATCAAGTAGAGGAGGCCATAAAATACATAAAGAGCCTGGAGGAAAAGGTGAAGATGGCACAGGAGAAGAAAGAAAGCTTAACGGGAAGGAAAAGGTCTCTTGCATGCTGCTTGGATACTGCTTTTCAAACTAAGGGAAGCCTAAGGTCACCACAAATCGAGATTCGTGAAATTGGTTCTTCACTGGAAATTGTTCTGATTACCGGATTAGACAACCAGTTCATTTTCTATGAGATCATTCGGATTCTTCATGAGGAGAACATAGAGGTTGTGGCTGCCAATTCCTCACTTTCTGGAGATTCAATGCATCACGTTGTGCATGCTGAGATACGACAATCATTGTCTGAATTCGGAGCTACCAAGGTAAGTGAGAGGTTGAAAAGGTTTGTGTACGGATCCACAAGCGATTTGGAAATACAGCCTGCGTTGTGGGATTTTGAAATTGATTCTGATGCGTGGGGCTTCTAA | 624 | 0.4311 | MDLQQQGSQSSSSAKLERRVIEKNRRNQMKILYSKLYSLLPNYNPKETLPLPDQVEEAIKYIKSLEEKVKMAQEKKESLTGRKRSLACCLDTAFQTKGSLRSPQIEIREIGSSLEIVLITGLDNQFIFYEIIRILHEENIEVVAANSSLSGDSMHHVVHAEIRQSLSEFGATKVSERLKRFVYGSTSDLEIQPALWDFEIDSDAWGF | 207 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0795 | 207 | Gene3D | - | 4 | 93 | IPR036638 | GO:0046983 | |
| Glsi04g0795 | 207 | FunFam | Transcription factor bHLH162 | 6 | 91 | - | - | |
| Glsi04g0795 | 207 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 13 | 65 | IPR011598 | GO:0046983 | |
| Glsi04g0795 | 207 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Glsi04g0795 | 207 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Glsi04g0795 | 207 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 11 | 90 | IPR036638 | GO:0046983 | |
| Glsi04g0795 | 207 | Coils | Coil | 55 | 82 | - | - | |
| Glsi04g0795 | 207 | PANTHER | ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED | 10 | 183 | - | - | |
| Glsi04g0795 | 207 | Pfam | Helix-loop-helix DNA-binding domain | 17 | 66 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi04g0795 | Glsi-ChrGlsi04 | 5658534 | 5659372 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi04g0795 | 3 | 182 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT4G20970 | 35.638 | 6.63e-32 | 112 |
Transcription factors information