Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0791 ATGGGCTGCATATATTCCAAGACTTCAGCTGTGGAAGACAGCCGGGAAGATTTGACAAAGAAATTTTCATCATCTAGCAAAAGGGGGTCGGAGCTGACTGTTTCACGATTGAATTCCTCGAAAAGGGGAGTTTGGGAAAATGATAAGTTAGATGGTAGTGACTTGAAGGTTTCATTAATTGACAAGAAAGCCAGTGGCTCGTTACAGTTGTATGATGATCACATTGGGAAGAAGGAAGCAGAGAAGCCGGAATTAACTGTCCTTAATAATCCTGGTCTTGGAAGGGTTCCAAAGGCTGCAGAAGGAGAGCAAGTTGCAGCAGGATGGCCGGGTTGGCTTTCTTCTGTTGCGGGTGAAGCTATCAAGGGATGGATACCACGAAGTGCAAATACTTTTGAGAGGTTGTATAAGATTGGTCAAGGAACTTACAGTACTGTTTATAAAGCACGTGATGTGACTCACCAAAAGATCGTTGCTTTGAAGAGAGTACGCTTTGATAATCTTGATCCTGAGAGTGTCAAGTTCATGGCAAGGGAAATCCTTATTCTGCGTAGGTTTGACCATCCAAATATAATAAAGTTGGAGGGCTTGATAACATCTGAGACGTCTCGAAGCCTATACCTCATTTTTGAGTATATGGAGCATGATCTTACTGGACTAGCATCCTGTCCTGGCATTAAGTTTTCTGAACCACAGGTTAAATGCTACATGCAACAACTTCTTAGTGGATTGGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACAATAATGGCATCTTAAAAATTGCAGATTTTGGTTTGGCAAGTTTTTTTGACCCCCATCACAGTGTTCCATTGACCAGTCGTGTGGTGACTCTCTGGTATAGACCACCAGAACTTTTACTCGGAGTATCTCATTATGGAGTTGCAGTAGATTTGTGGAGCACTGGTTGCATACTGGGAGAACTATATTCTGGCAGGCCCATATTGCCGGGTAAAACGGAGGTTGAGCAATTGCATAGGATTTTTAAGCTTTGCGGATCACCATCTGAGGACTATTGGCTTAAATTGCGGTCGCCACATTCAACAGTATTCAAGCCTCCACACCATTACAGACAATGTATTGCAGAAACACTTAAAGAATATCCATCTGCTGCTGTGAAGCTTATAGAGACACTACTTTCTGTAGATCCTGAACAACGAGGGACAGCAGCGGCTGCTCTAAAAAGTGAGTTCTTCACAACGGAGCCCTTTGCTTGTGATTCATCAAGTTTACCAAAATATCCTCCCAGCAAAGAGATTGATGCTAAATTGCGGGATGAAACAACCAGAAGGCAGAGAGCTGTTGGAGGAAGGGAGCAGAAAGTTGGCTCAAGAGTTAGACAAGAAAAAGAACCCGGGATACTTCTTCCAGCAAAAGACAATGTTGACCCACGCATACCAATGCAGCAAGGACAACGTCATTCCAAATCAAAGAGCCGAAGTGAATTGTTCAACGCCCAGAGAGAACCTGTTTCTGGATATTTGGTTTATCCACATAAACAGTCAGATGTTAAAGAAATGAAAAATAATTTCACTGAACATCTTTATAGGAGGCCTTCACATTCAGGTCCATTGGTTCATAGTGCTGGCTGGGCAAAGGGTGGAGAGGAAGCTGATGAGCGGTATCTTGATTCAAATAGAATCAACCTATCAAAACTATCTGGTTTAGTGGCATCTAGGACTCAGGAGGAAAATTCAGTTGCCTCACGGCCTAGAAGGACAGCTGAAGTACGAAAATCTGTGGAGTCAAGTAATAGATCAGAGTCAAGAAGGCAGGATAAGATACGCCAGTCTCAGAGAATTGTGGATCTCTGTCAAATAGAAAATGGAAGAGCCCCCACTAAAGAATTAACTCTGGACGGGCATGGGTCCAGGGAAAACAAGATCTATCTCTCTGGTCCATTACTGGCTTCATCAAACAACATGGATCAAATGCTTAAAGAGCATGATCGAAAGATCCAGGAATTTTCAAGACGAGCGCGAATTGACAAATCAAGAGGTGAGAAAATTCGTGCACGGCGAAAGTAG 2079 0.431 MGCIYSKTSAVEDSREDLTKKFSSSSKRGSELTVSRLNSSKRGVWENDKLDGSDLKVSLIDKKASGSLQLYDDHIGKKEAEKPELTVLNNPGLGRVPKAAEGEQVAAGWPGWLSSVAGEAIKGWIPRSANTFERLYKIGQGTYSTVYKARDVTHQKIVALKRVRFDNLDPESVKFMAREILILRRFDHPNIIKLEGLITSETSRSLYLIFEYMEHDLTGLASCPGIKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDNNGILKIADFGLASFFDPHHSVPLTSRVVTLWYRPPELLLGVSHYGVAVDLWSTGCILGELYSGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRSPHSTVFKPPHHYRQCIAETLKEYPSAAVKLIETLLSVDPEQRGTAAAALKSEFFTTEPFACDSSSLPKYPPSKEIDAKLRDETTRRQRAVGGREQKVGSRVRQEKEPGILLPAKDNVDPRIPMQQGQRHSKSKSRSELFNAQREPVSGYLVYPHKQSDVKEMKNNFTEHLYRRPSHSGPLVHSAGWAKGGEEADERYLDSNRINLSKLSGLVASRTQEENSVASRPRRTAEVRKSVESSNRSESRRQDKIRQSQRIVDLCQIENGRAPTKELTLDGHGSRENKIYLSGPLLASSNNMDQMLKEHDRKIQEFSRRARIDKSRGEKIRARRK 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0791 692 Gene3D Transferase(Phosphotransferase) domain 1 220 454 - -
Glsi04g0791 692 PANTHER CELL DIVISION PROTEIN KINASE 130 421 - -
Glsi04g0791 692 MobiDBLite consensus disorder prediction 668 692 - -
Glsi04g0791 692 CDD STKc_CDK9_like 132 416 - -
Glsi04g0791 692 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Glsi04g0791 692 SUPERFAMILY Protein kinase-like (PK-like) 126 421 IPR011009 -
Glsi04g0791 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Glsi04g0791 692 Gene3D Phosphorylase Kinase; domain 1 126 219 - -
Glsi04g0791 692 Pfam Protein kinase domain 133 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0791 692 MobiDBLite consensus disorder prediction 576 614 - -
Glsi04g0791 692 MobiDBLite consensus disorder prediction 668 684 - -
Glsi04g0791 692 MobiDBLite consensus disorder prediction 583 614 - -
Glsi04g0791 692 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0791 692 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g0791 692 MobiDBLite consensus disorder prediction 442 473 - -
Glsi04g0791 692 FunFam probable serine/threonine-protein kinase At1g54610 119 214 - -
Glsi04g0791 692 MobiDBLite consensus disorder prediction 442 504 - -
Glsi04g0791 692 FunFam probable serine/threonine-protein kinase At1g54610 215 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0791 Glsi-ChrGlsi04 5605255 5610966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0791 124 484 Core Cell Cycle Gene Families AT5G10270 44.562 5.24e-107 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Glsi04g0791 Pkinase 1.8e-67 CL0016