Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0777 ATGGCCTTGGATCGGTATCTCGAGGAGGCTGTGCCCCAAACTGATTGCTTGGGAGAAGAGAAATCTTCTTTGGATAAGTGGAAATCCGCCACTGATTCCATTGCAAATTCTGATACAAGTGCTTCTAGTGGCTTTGACTGCAACATCTGCCTGGATTGCGCACAAGATCCAGTGGTCACTCTTTGTGGTCACCTCTACTGCTGGCCCTGCATTTACAAGTGGCTCCACTTCCGTAGTATCTCCTCTGAAAACAATGAACAGCAGAGGCCACAATGTCCAGTATGCAAAACAGAAGTTTCCCAATCCTCCCTGGTTCCACTATATGGCCATGGCCAAACCCCTAAGCCTTCCAAAGACAAGTCCCACAATGTAGGGACTGTCATACCACGAAGACCACACGGACCAACATGTGAGGTTGTCCCAGCAAGATCATCTAGTGCTACTACTACTACTACTGTTTCCCAACCAGCTTTGCAGTTTTATCATCGCCATTATCCTTATCATCGTCAACAACTAAACTCAATTCCAGGCAGCTACACTTCCCCAATGCTTAGCATGGATGGTGCACAAAGAAACACATTTGATACAAGTATTGGAGTTTTCGGTGAGATGATATATGCAAGGATCTTTGGTAACCAAGTGTCAAACATATACACTTACCCTAATACATATAATCTAACAGGGAACAGTAATCCAAGGATCAGAAGGCAGTTAATGCAAGCTGATAAGTCACTCAATAGAATCAGCTTTTTCCTCCTTTGTTGCTTAGTTTTGTGTCTTCTCTTATTCTGA 792 0.4407 MALDRYLEEAVPQTDCLGEEKSSLDKWKSATDSIANSDTSASSGFDCNICLDCAQDPVVTLCGHLYCWPCIYKWLHFRSISSENNEQQRPQCPVCKTEVSQSSLVPLYGHGQTPKPSKDKSHNVGTVIPRRPHGPTCEVVPARSSSATTTTTVSQPALQFYHRHYPYHRQQLNSIPGSYTSPMLSMDGAQRNTFDTSIGVFGEMIYARIFGNQVSNIYTYPNTYNLTGNSNPRIRRQLMQADKSLNRISFFLLCCLVLCLLLF 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0777 263 ProSiteProfiles Zinc finger RING-type profile. 47 96 IPR001841 -
Glsi04g0777 263 FunFam E3 ubiquitin-protein ligase RMA1H1 isoform A 30 109 - -
Glsi04g0777 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 112 IPR013083 -
Glsi04g0777 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 7 260 IPR045103 GO:0005783|GO:0006511|GO:0061630
Glsi04g0777 263 Pfam Zinc finger, C3HC4 type (RING finger) 47 95 IPR018957 GO:0046872
Glsi04g0777 263 SUPERFAMILY RING/U-box 43 108 - -
Glsi04g0777 263 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
Glsi04g0777 263 SMART ring_2 47 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0777 Glsi-ChrGlsi04 5495424 5496215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0777 39 263 C3H Transcription Factor Family AT4G28270 36.596 5.41e-43 143