Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0771 ATGCAGCGCCACCGTGGCTCCGCCCTGTTTTTAAGCTTCTGCTTTAGCTTGCTGGTAACCGCGCTGGCTCAGCTTCAGCACCGGATCATCGACCTACATTGGTACCCGGGAACGGCCACATGGTACGGCGACCCGGAAGGAGACGGCAGCACCGGTGGGGCATGCGGATACGGTAGCTTAGTGGACGTGAGGCCATTGAAGGCTCGGGTCGGGGCGGTTGGTCCCGTACTGTTCATGAACGGTGAGGGGTGTGGGGCATGCTATAAGGTGAAGTGCCTGGACGAGAGTATGTGCTCGAGGCGAGCCGTGACGGTCATAATCACCGACGAGTGCCCTGGTTGCCCCTCCGACCGGACCCACTTCGACCTCAGTGGCGCCGCATTTGGGCGCATGGCCATAGCCGGCGAGAACGGTCAGCTCAGAAACCGTGGTCAAATCCCAGTCATTTACCGAAGAACAAAATGTAAATATCCTGGTAGAAACATTGCCTTCCATGTTAATGAAGGTTCAACACCTTTTTGGCTATCACTTTTGGTAGAGTTTGAGGATGGAGATGGAGACATCGGCTCTATGCATATACAAGAAGCAGGGTCTAGTGATTGGCTTCAGATGAATCATCTATGGGGTGCAAATTGGTGCATTATTGGGGGACCTTTGAGGGGACCATTCTCTGTGAAACTAAGCACAACCACTGGGAGAGCTCTATCTGCCAGATCTGTTATTCCAAGTAGTTGGTCTCCAAAAGCCACTTACACCTCTCGCCTAAATTTCTTCCCTTAG 780 0.5333 MQRHRGSALFLSFCFSLLVTALAQLQHRIIDLHWYPGTATWYGDPEGDGSTGGACGYGSLVDVRPLKARVGAVGPVLFMNGEGCGACYKVKCLDESMCSRRAVTVIITDECPGCPSDRTHFDLSGAAFGRMAIAGENGQLRNRGQIPVIYRRTKCKYPGRNIAFHVNEGSTPFWLSLLVEFEDGDGDIGSMHIQEAGSSDWLQMNHLWGANWCIIGGPLRGPFSVKLSTTTGRALSARSVIPSSWSPKATYTSRLNFFP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 74 92 IPR007118 GO:0005576
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Glsi04g0771 259 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Glsi04g0771 259 PANTHER EXPANSIN-B3 18 257 - -
Glsi04g0771 259 FunFam Beta-expansin 3 157 258 - -
Glsi04g0771 259 SMART dpbb_1 70 150 IPR007112 -
Glsi04g0771 259 Gene3D - 156 254 IPR036749 -
Glsi04g0771 259 Pfam Expansin C-terminal domain 162 242 IPR007117 -
Glsi04g0771 259 Pfam Lytic transglycolase 75 149 IPR009009 -
Glsi04g0771 259 FunFam Expansin B3 20 156 - -
Glsi04g0771 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 253 IPR007117 -
Glsi04g0771 259 SUPERFAMILY PHL pollen allergen 160 253 IPR036749 -
Glsi04g0771 259 CDD DPBB_EXPB_N 34 155 - -
Glsi04g0771 259 Gene3D - 22 155 IPR036908 -
Glsi04g0771 259 PRINTS Major pollen allergen Lol pI signature 132 147 IPR005795 GO:0005576|GO:0019953
Glsi04g0771 259 PRINTS Major pollen allergen Lol pI signature 164 179 IPR005795 GO:0005576|GO:0019953
Glsi04g0771 259 PRINTS Major pollen allergen Lol pI signature 229 246 IPR005795 GO:0005576|GO:0019953
Glsi04g0771 259 PRINTS Major pollen allergen Lol pI signature 180 195 IPR005795 GO:0005576|GO:0019953
Glsi04g0771 259 PRINTS Major pollen allergen Lol pI signature 110 125 IPR005795 GO:0005576|GO:0019953
Glsi04g0771 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 160 IPR007112 -
Glsi04g0771 259 SUPERFAMILY Barwin-like endoglucanases 33 159 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0771 Glsi-ChrGlsi04 5446673 5448802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0771 11 195 Expansin Gene Family AT4G28250 71.658 8.92e-96 278