Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0769 ATGGGTGCTCTTCAATCTACACTTCTCTACTTGATTTTGCTACAGTTATGCAGGATTTCTGCTAACAAGGAAGGGGAATGGAAGTCTGCCACTGCTACATACTCCAAAGATACAGATGGGTCTCTCATTACGGAAGGAGCTTGTGGTTATGGAGACCTTCACAGGGCTAGCTATGGGAAATATAGTGCTGGGTTAAGCACCATCTTGTTCAACAGAGGGAGTACTTGCGGAGCTTGTTATGAGATCAGATGTGTTGACCACATCTTGTGGTGCTTGCTGGGAAGCCCATCTGTAGTTCTTACTGCTACAGATTTCTGCCCTCCAAATTATGGACTTTCAGTTGATTATGGTGGCTGGTGCAATTTTCCAAGGGAACATTTTGAGATGTCAAAAGCTGCATTTGCTGAGATTGCCAAGAGAAAAGCAGACATAGTGCCAGTTCAGTATAGAAGAGTAAAGTGTCAAAGAAGTGGTGGCTTGAAATTTACAATGACTGGTAGTTCTCACTTCTACCAAGTCTTGATTACCAATGTAGGGTTGGATGGTGAAGTGGTCGCTGTGAAAGTGAAGGGATCAAGAACAGGTTGGATACCCATGGCAAGGAATTGGGGACAAAACTGGCATTGCAATGTCAACCTTCAACGACAGCCTCTGTCCTTTGAGGTGACCATCAGTGGTGGAAGAACACTCACTTCTTACAATGTCGCCCCAGCAAACTGGGAATTTGGACAGACATTTGAAGGAAAGCAGTTTTAG 756 0.4444 MGALQSTLLYLILLQLCRISANKEGEWKSATATYSKDTDGSLITEGACGYGDLHRASYGKYSAGLSTILFNRGSTCGACYEIRCVDHILWCLLGSPSVVLTATDFCPPNYGLSVDYGGWCNFPREHFEMSKAAFAEIAKRKADIVPVQYRRVKCQRSGGLKFTMTGSSHFYQVLITNVGLDGEVVAVKVKGSRTGWIPMARNWGQNWHCNVNLQRQPLSFEVTISGGRTLTSYNVAPANWEFGQTFEGKQF 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0769 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Glsi04g0769 251 Gene3D - 14 155 IPR036908 -
Glsi04g0769 251 Gene3D - 159 251 IPR036749 -
Glsi04g0769 251 FunFam Expansin 159 251 - -
Glsi04g0769 251 PANTHER EXPANSIN-A15 12 251 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Glsi04g0769 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Glsi04g0769 251 CDD DPBB_EXPA_N 26 154 - -
Glsi04g0769 251 SMART dpbb_1 62 149 IPR007112 -
Glsi04g0769 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Glsi04g0769 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Glsi04g0769 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Glsi04g0769 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Glsi04g0769 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Glsi04g0769 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Glsi04g0769 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0769 Glsi-ChrGlsi04 5442143 5443073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0769 4 251 Expansin Gene Family AT4G38210 66.135 3.01e-124 352