Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0716 ATGCGTTGGTCTTCTTTCTACCAGACAGCCTCCAGGGCTTTTCATGAATCTCCCTCCTGGTCCAAGCTTCTGATTGTATGCACTGTCAGTGGTGGAGGCTTGGTGGCATTTGCTGATGCCAGACCAATTCAAAGTGAAAATGGTAATAAATGCCCCAAAAAGAAGGTGGTGGTACTTGGAACTGGTTGGGCTGGGACTAGTTTTCTGAAAAATTTGCAAAACCCTTCATTTGATGTTCAAGTGGTTTCACCTCGTAACTATTTTGCGTTTACACCTTTGCTGCCAAGCGTTACATGTGGCACTGTAGAAGCTCGAAGCATTGTTGAACCAATTCGCAACATCAACAAGAAGGGTGTAAATATTGAATTCATGGAAGCTGAATGCTATAAGATCGATGCCAAGAATAAAAAAGTGTACTGTCGTTCTAGTCAGGACAGAAACCTGGGTGGCAGAAAAGAACTCTCTATTGATTATGACTACCTTATAATAGCCATGGGAGCCCGTTCTAATACTTTTAACACACCGGGTGTTCTTGAGTACGCCCACTTCTTGAAGGAAGTGGAAGATGCTCAGAGAATCCGTCAAACAGTGATTGACATTTTTGAAAGGGCAAGCCTCCCTTGTTTATCTGAAGAGGAGAAGAAGAAACTTCTGAATTTTGTGATAGTTGGTGGTGGTCCAACTGGTGTAGAATTTGCTGCTGCGCTTCATGACTTCGTTCATGATGATCTATCTAGATTGTACCCTTCTGTTAAAGACTATGTCAAGATTACTCTTTTGGAGGCAGGCGATCATATATTGAACATGTTCGACAAGAGGATTACTGAGTTTGCCGAAACACAATTCAAAAGAAATGGTATCGATGTGAAATTAGGCTCAATGGTAGTGAAAGTGACTGAAGATGAAATATGTACCAAAGAAAGAGGTACTGGTAATGCTGTTTCTCTACCTTATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGTCCTGAAGTACTTCAATTCATGAAAGAGATTGGTCAGGTTAATAGGCGTGCAATACTTACGGATGAATGGTTAAGGGTGGAAGGATTTGACGACATCTATGCTCTTGGTGATTGTGCCACCATAAATCAACGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAGGCAGACACGAACAACACTGGAAAATTAGATATTGACCAATTTCAAGAGGTTGTTGGGGACATCATTGAGAGGTACCCACAAGTGGATATTTATTTAAAGAAGAAGCAAATGAAAAACATAGCAGCCTTAATGAAGAAATCCGAAGAAAACTCTGCGCTAGTGGACATTGAATCATTCAAAACTAGTCTTTCCGAAGTGGATTCTCAGATGAAAAACCTTCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGTGCCTATCTTGCAAACTGTTTCAATCGCATGGATGAGTGTGAGAAGTATCCTGAAGGCCCTCTTAGGTTTAGGGGAACAGGGCGTCACCGCTTTCATCCCTTCAGGTACAAGCATTTAGGGCAATTTGCTCCTCTAGGAGGAGAAACAACTGCATTTCAGCTTCCGGGAGACTGGGTTTCAATTGGGCATAGCTCCCAATGGCTCTGGTATTCGGTATATGCAAGCAAGCAAGTTAGCTGGCGAACGAGGATGCTGGTGGTATCTGACTGGGGAAGGCGTTTCTTATTTGGCAGGGATTCTAGCCGAATCTGA 1722 0.4262 MRWSSFYQTASRAFHESPSWSKLLIVCTVSGGGLVAFADARPIQSENGNKCPKKKVVVLGTGWAGTSFLKNLQNPSFDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRNINKKGVNIEFMEAECYKIDAKNKKVYCRSSQDRNLGGRKELSIDYDYLIIAMGARSNTFNTPGVLEYAHFLKEVEDAQRIRQTVIDIFERASLPCLSEEEKKKLLNFVIVGGGPTGVEFAAALHDFVHDDLSRLYPSVKDYVKITLLEAGDHILNMFDKRITEFAETQFKRNGIDVKLGSMVVKVTEDEICTKERGTGNAVSLPYGMVVWSTGIGARPEVLQFMKEIGQVNRRAILTDEWLRVEGFDDIYALGDCATINQRKVMEDIAVIFSKADTNNTGKLDIDQFQEVVGDIIERYPQVDIYLKKKQMKNIAALMKKSEENSALVDIESFKTSLSEVDSQMKNLPATAQVAAQQGAYLANCFNRMDECEKYPEGPLRFRGTGRHRFHPFRYKHLGQFAPLGGETTAFQLPGDWVSIGHSSQWLWYSVYASKQVSWRTRMLVVSDWGRRFLFGRDSSRI 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0716 573 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 378 IPR023753 GO:0016491
Glsi04g0716 573 Pfam Thiamine biosynthesis protein (ThiI) 372 465 IPR020536 GO:0004810
Glsi04g0716 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 347 369 - -
Glsi04g0716 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 158 176 - -
Glsi04g0716 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 219 237 - -
Glsi04g0716 573 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Glsi04g0716 573 Gene3D - 449 560 - -
Glsi04g0716 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 44 404 - -
Glsi04g0716 573 ProSiteProfiles EF-hand calcium-binding domain profile. 375 410 IPR002048 GO:0005509
Glsi04g0716 573 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 421 572 - -
Glsi04g0716 573 SUPERFAMILY FAD/NAD(P)-binding domain 53 271 IPR036188 -
Glsi04g0716 573 SUPERFAMILY FAD/NAD(P)-binding domain 214 372 IPR036188 -
Glsi04g0716 573 Gene3D - 43 448 - -
Glsi04g0716 573 PANTHER NADH DEHYDROGENASE 45 573 IPR045024 GO:0003954|GO:0006116
Glsi04g0716 573 SUPERFAMILY EF-hand 368 459 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0716 Glsi-ChrGlsi04 5063080 5066491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0716 1 573 Chloroplast and Mitochondria Gene Families AT4G21490 68.793 0.0 815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi04g0716 04 5063080 5066491 Glsi04g0716 04 5063080 5066491 ECH