Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0704 ATGGGAAGAGCACCTTGCTGTGACAAAAATGGACTCAAGAAAGGTCCCTGGACGCCTGAGGAAGATACGAAGCTCATCAACTACATTCAGACTCAGGGTGCAGGCAATTGGCGTATCCTCCCCAAGAATGCTGGTCTTCAAAGATGTGGCAAGAGTTGCCGTCTTCGATGGACAAATTACCTGAGACCCGACATCAAGAGAGGAAGATTCTCCTTTGAAGAAGAAGAGACCATCATTCAGTTGCACAGTATCTTGGGAAACAAATGGTCGTCTATAGCAGCTCGGTTGCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACACCCATATAAGAAAGAGGCTGCTTCGAATGGGGATTGATCCTGTTACTCATACCCCACGCCTTGATCTTCTTGACTTATCCTCCATTCTCAGGTCAGTGTTGGGGAACCCATCGCTTTTGAATCTGCAAAGCTTATTGGGTGCTCAAGCGTTGATCAACCCGGAAGCTTTAAATCTAGCCACCACTCTGTTAACGTCGACAAGTGAACACCCAGAATTGGTTTCGCAGAATCTACCACAAATCCTAGCTGGGAATTCTTCTCAAGTTCAAGTCGATCCACAAGTACAATTCAGTAGTCAGTTTCAGACGCCAACTCAAATCCCCAATGTGGAAGGGTTCTCGGGGAATATGACAGACATGAATTCGATTCCATCCAATATGGCTGAGATTGAGAACCTTTTGTTGCAACCAAACCAAGTTGATTCGATGGGAGACCCAACTTTCTTGCAGTGTATAAACAACGGAAACCAAAACATGGGCTATGACTCTCTTCTATCTACCCCTTCATCATCGACGTATGTGAATAGCAGCGGTGATGAGGAGAGAGATAGCCATTGCAGCAATTTGTTCAAGTTCGAAATTCCAGAGAGCCTGGACATTAATGACTTCTTGTAA 942 0.4501 MGRAPCCDKNGLKKGPWTPEEDTKLINYIQTQGAGNWRILPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSSIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDLLDLSSILRSVLGNPSLLNLQSLLGAQALINPEALNLATTLLTSTSEHPELVSQNLPQILAGNSSQVQVDPQVQFSSQFQTPTQIPNVEGFSGNMTDMNSIPSNMAEIENLLLQPNQVDSMGDPTFLQCINNGNQNMGYDSLLSTPSSSTYVNSSGDEERDSHCSNLFKFEIPESLDINDFL 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0704 313 CDD SANT 69 112 IPR001005 -
Glsi04g0704 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi04g0704 313 CDD SANT 16 61 IPR001005 -
Glsi04g0704 313 FunFam MYB-related transcription factor 13 66 - -
Glsi04g0704 313 Gene3D - 69 116 - -
Glsi04g0704 313 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi04g0704 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi04g0704 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi04g0704 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 259 - -
Glsi04g0704 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi04g0704 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi04g0704 313 FunFam Transcription factor MYB39 69 130 - -
Glsi04g0704 313 SMART sant 13 63 IPR001005 -
Glsi04g0704 313 SMART sant 66 114 IPR001005 -
Glsi04g0704 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi04g0704 313 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0704 Glsi-ChrGlsi04 4979192 4980337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0704 1 313 MYB Transcription Factor Family AT4G21440 48.501 2.28e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0704 Myb_DNA-binding 3.8e-14 CL0123