Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0698 ATGGTGAGAGGTCCTTACTACGACAAAAATGGACTGAAGAGAGGTGCTTGGAGTAAGGAAGAGGATGAAAGATTAAGAGCACATGTTGAGAGATATGGTCATTCCAATTGGCGTCAACTCCCCAAATTTGCAGGTTTATTAAGATGTGGGAAAAGTTGCAGACTTCGCTGGGTAAATTATCTGCGGCCAAATCTAAAACGTGGGAACTACACCCAAGAAGAAGAGCAAATAATCATCAAATTACATGAACAGCATGGAAATAAATGGTCTCTTATTGCTGAAAATTTACCTGGAAGAACAGACAACGAGGTAAAGAACCATTGGCATAGCCGCCTAAAGAAAAGATTAGAATGCAATCCTGAGATGACATGTGAATTCAAAATGATGTCTAGTGATACTTCTGAAGGAGAAACAACTCACTATTCTGAATCTGAAAACCCAATACTTGGTGGTGATCCCTCCTATAATATTATAGAAAGCTCAAAGCCTACAGAAATCACATCCTACACCGAAGACAATTCATCTTCGAACTTCAACTCCAGAGAAGAAGGAGATGCAATTGGTCCATGGGAAATATTTGAAGAATTCAGCAATTTTTGGACTGAACCATTTATCCTGGAAAATACATATAGTCAGCATAACTACCCCAGTCCCAACTATACAGCAAATGAAGGAGACATGGACGAATATGTTTCATACCTCTATGATAATTCAGAGTTTTTGTGCCATGTGACGCAAGAACTGCCAAAAGATCATTAA 759 0.3887 MVRGPYYDKNGLKRGAWSKEEDERLRAHVERYGHSNWRQLPKFAGLLRCGKSCRLRWVNYLRPNLKRGNYTQEEEQIIIKLHEQHGNKWSLIAENLPGRTDNEVKNHWHSRLKKRLECNPEMTCEFKMMSSDTSEGETTHYSESENPILGGDPSYNIIESSKPTEITSYTEDNSSSNFNSREEGDAIGPWEIFEEFSNFWTEPFILENTYSQHNYPSPNYTANEGDMDEYVSYLYDNSEFLCHVTQELPKDH 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0698 252 Gene3D - 14 66 - -
Glsi04g0698 252 FunFam MYB-related transcription factor 13 66 - -
Glsi04g0698 252 SMART sant 66 114 IPR001005 -
Glsi04g0698 252 SMART sant 13 63 IPR001005 -
Glsi04g0698 252 MobiDBLite consensus disorder prediction 131 153 - -
Glsi04g0698 252 CDD SANT 69 112 IPR001005 -
Glsi04g0698 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 207 - -
Glsi04g0698 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi04g0698 252 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Glsi04g0698 252 CDD SANT 16 61 IPR001005 -
Glsi04g0698 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi04g0698 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi04g0698 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi04g0698 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi04g0698 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi04g0698 252 Gene3D - 69 140 - -
Glsi04g0698 252 MobiDBLite consensus disorder prediction 131 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0698 Glsi-ChrGlsi04 4933996 4935212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0698 1 119 MYB Transcription Factor Family AT2G31180 66.387 2.05e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0698 Myb_DNA-binding 3.6e-13 CL0123