Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0697 ATGGTGAGAGGTCCCTTCTTTGACAAAAATGGAGTTAAGAGAGGTGCGTGGAGTGCAGAAGAGGATGAGAGGCTTAGATCTTATATTCAAACCTATGGTCATCCTAATTGGCGTCAACTCCCCAAGTTTGCAGGCTTGGCGAGATGTGGAAAGAGTTGCAGGCTTCGTTGGTTGAATTACCTAAGGCCAAATCTAAGACATGGGAATTTCACCCAAGAAGAAGAGGAAATCATAATCAAACTACATGAGCAACTTGGAAATAAATGGTCGCTGATTGCTGAAAAACTGCCTGGAAGAACAGATAATGATGTAAAAAACCTTTGGCATAGCCAACTAAAGAAGCGATCAAAGCAGAAGGAGAGGATTAATAATGATATTCAACATTCAGAAGCTAATATTATGGATGTTGCTGCTGAGTCCCACGTTGTATTAGAAAGCTCATTAGTGACTTCCACAGAAATGTTGTCTCCAGCGGATCAAGACAATTCTGCTTCCTTGGAATCTAATGATATAGACTGCTCTCCCATGAATTGGTCCAGAGAACAAGACAGCGTAGCTTCGTGGGAAAACAAGTTTCAAGAATATTTTATGGGCAGCGATTTTTGGACTCAACCATTTGTATCAGAAAATGAATATAGTGAAGATTACTACTATCCCATTCCCACCAGAGGAGACAGTTTTTCATATGATGGTACTGACTTGTTGTACCAAGTGATGCAAGAACTCCCAAAATATTAA 738 0.4024 MVRGPFFDKNGVKRGAWSAEEDERLRSYIQTYGHPNWRQLPKFAGLARCGKSCRLRWLNYLRPNLRHGNFTQEEEEIIIKLHEQLGNKWSLIAEKLPGRTDNDVKNLWHSQLKKRSKQKERINNDIQHSEANIMDVAAESHVVLESSLVTSTEMLSPADQDNSASLESNDIDCSPMNWSREQDSVASWENKFQEYFMGSDFWTQPFVSENEYSEDYYYPIPTRGDSFSYDGTDLLYQVMQELPKY 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0697 245 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi04g0697 245 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi04g0697 245 Gene3D - 68 136 - -
Glsi04g0697 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi04g0697 245 CDD SANT 16 61 IPR001005 -
Glsi04g0697 245 Coils Coil 112 139 - -
Glsi04g0697 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi04g0697 245 SMART sant 66 114 IPR001005 -
Glsi04g0697 245 SMART sant 13 63 IPR001005 -
Glsi04g0697 245 FunFam Transcription factor RAX3 7 67 - -
Glsi04g0697 245 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi04g0697 245 Gene3D - 14 66 - -
Glsi04g0697 245 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi04g0697 245 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Glsi04g0697 245 CDD SANT 69 109 IPR001005 -
Glsi04g0697 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0697 Glsi-ChrGlsi04 4930965 4931909 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0697 1 115 MYB Transcription Factor Family AT2G31180 66.957 1.68e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0697 Myb_DNA-binding 6.6e-14 CL0123