Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0694 ATGAGGACTCCCTGCAGTGACAAGAGTGGGCTGAAGAAAGGCACATGGACACCAGAAGAAGACAGCAAATTAATTGCATATGTTACTAGATATGGCTGCTGGAATTGGCGCCAGCTGCCCAGGTTTGCAGGTCTAGCGCGGTGTGGAAAGAGTTGCAGACTGAGGTGGCTCAATTATCTGAGGCCAAACATCAAAAGAGGGAACTACACTAAAGAAGAAGATGACATTATCATCAAACTCCAACAACAGCTGGGTAACAAATGGTCAGCTATTGCCGCTGAGCTGCCAGGAAGAACAGACAATGAGATCAAAAACCATTGGCACACCAACCTCAAGAATAAGGAGATGGACCCAATGCCCTCCGGCGATCATTCTCAAGGTATTCCAGATCATGGCAAATCGTCATCGGAATCAAGCACGGCTGAGTTCCTCGGCATAACCTCAGAGACCACAGTAACCAGCAGTAACGAAAGTTTGGCTGTGGAGAATGCTTTTCTGGAGCCGATGAGCGGAAACTTCTGGACAGATCCATATATAGCTGACTTTGACATTTCCTACGACGTCCCAACTGAATTACTGTCATTGCCCCCTCACGGAACTGAACCTCAATACTTTAGTTCTGTTTGTAATGCACAACTTTGGAGCCACAATAATTTGTATGACCAATATTCTGGCTTCTTCTAA 684 0.4605 MRTPCSDKSGLKKGTWTPEEDSKLIAYVTRYGCWNWRQLPRFAGLARCGKSCRLRWLNYLRPNIKRGNYTKEEDDIIIKLQQQLGNKWSAIAAELPGRTDNEIKNHWHTNLKNKEMDPMPSGDHSQGIPDHGKSSSESSTAEFLGITSETTVTSSNESLAVENAFLEPMSGNFWTDPYIADFDISYDVPTELLSLPPHGTEPQYFSSVCNAQLWSHNNLYDQYSGFF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0694 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Glsi04g0694 227 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Glsi04g0694 227 MobiDBLite consensus disorder prediction 113 141 - -
Glsi04g0694 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Glsi04g0694 227 SMART sant 12 62 IPR001005 -
Glsi04g0694 227 SMART sant 65 113 IPR001005 -
Glsi04g0694 227 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Glsi04g0694 227 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Glsi04g0694 227 CDD SANT 68 111 IPR001005 -
Glsi04g0694 227 FunFam MYB-related transcription factor 12 65 - -
Glsi04g0694 227 Gene3D - 68 138 - -
Glsi04g0694 227 CDD SANT 15 60 IPR001005 -
Glsi04g0694 227 Gene3D - 6 66 - -
Glsi04g0694 227 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Glsi04g0694 227 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Glsi04g0694 227 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0694 Glsi-ChrGlsi04 4902264 4903115 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0694 2 194 MYB Transcription Factor Family AT2G31180 48.187 5.93e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0694 Myb_DNA-binding 1.1e-12 CL0123