Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0690 ATGGCGAGAACCCCTGGCTGCGACAAAAGTGGACTGAAGAAAGGGACATGGACGCCAGAGGAAGACAGGAAATTGATTGCTTATGTTACTAGGTATGGCCACTGGAATTGGAGCCAACTCCCCAAGTTTGCAGGTCTTTCGAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTATCTGAGGCCAAATATCAAAAAAGGGAACTACACTGCACAAGAAGAAGACACCATTATCAAACTCCAGGCAAAGCTTGGTAATAGGTGGTCTATGATTGCCGCTCACTTACCTGGAAGATCAGATAATGATATCAAGAATTACTGGCACGCCAACCTTAAGAAGCGCCTTCAACAAAACTCAGCGGCACATGCAAGTCCGCAAGTTTCCCAGCCCAAAAATCACTCCCCACCTGAATCCAGGCAAGAGAGAGATTCAGAGTCAGACGCAACAACTTGCCCTTTCCAAAGTACTCTGACGGAGACCGCAGCTGCCGGTAACGGGAGTAATATGCTTCTGGAAGATGGTCACTTAGCTTTTCTAGACGTATACACTCATGAGCCTTTAAGTGCAGATTTTTTGACACAGCCTTATGTGGCTGACATTTCCTGCTTTCCAAGTGAATTACTCGTACCTTTCGTGACTGAACCAGAAATTTTAAGTCCAGTGTACGATGCAAAACTTTGGAATCACTCAGAATAA 699 0.4564 MARTPGCDKSGLKKGTWTPEEDRKLIAYVTRYGHWNWSQLPKFAGLSRCGKSCRLRWMNYLRPNIKKGNYTAQEEDTIIKLQAKLGNRWSMIAAHLPGRSDNDIKNYWHANLKKRLQQNSAAHASPQVSQPKNHSPPESRQERDSESDATTCPFQSTLTETAAAGNGSNMLLEDGHLAFLDVYTHEPLSADFLTQPYVADISCFPSELLVPFVTEPEILSPVYDAKLWNHSE 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0690 232 Gene3D - 7 67 - -
Glsi04g0690 232 CDD SANT 69 112 IPR001005 -
Glsi04g0690 232 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 150 - -
Glsi04g0690 232 FunFam MYB-related transcription factor 13 66 - -
Glsi04g0690 232 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi04g0690 232 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Glsi04g0690 232 CDD SANT 16 61 IPR001005 -
Glsi04g0690 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi04g0690 232 Gene3D - 68 146 - -
Glsi04g0690 232 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi04g0690 232 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi04g0690 232 MobiDBLite consensus disorder prediction 119 151 - -
Glsi04g0690 232 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi04g0690 232 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi04g0690 232 SMART sant 13 63 IPR001005 -
Glsi04g0690 232 SMART sant 66 114 IPR001005 -
Glsi04g0690 232 MobiDBLite consensus disorder prediction 119 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0690 Glsi-ChrGlsi04 4870962 4871848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0690 1 139 MYB Transcription Factor Family AT5G15310 61.151 1.59e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0690 Myb_DNA-binding 9.6e-14 CL0123