Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0681 ATGAATCTCTGGCAGAGCTCTGAAAATCCAACTGACACATTTCTGCCTCAATTTTTTGTTCTGGTAATCATGATAACCAAAAGAAGGATCAGAAAGAGAGTATTTGTTGTTCTCTTGCCCCTATATGCTTGGTTACTATGTCTTTCTCAACCCTGTTTAGCCGGAGATACAATGAAGGTCGGTGAAAATCTTACTGACAACCTTGTTTCAGTTGGAAAATACTTTGAACTGGGTTTCTTTTCCCCTCCTGGAAGCTCTAACAGATACCTGGGAATATGGTATCATGGGTTAGAACCACGATCAGTTGTATGGGTTGCTAACAGAGACCAACCTGTAGTTGATTCCACTGGAGTTTTTCAACTTTCCGAAGATGGAAACCTCAAGGTATTAGATGCAAATGGAAGAAAATATTGGTCTTCGGGCCTTCAAGTATCGTCGTTTACAAACCGCACAGTGAAGCTCATGGATTCTGGAAACTTAATGCTAAGAGATGATCAATCTGAAATGAGCCTCTGGCAGAGCTTTGAACACCCTACGGACACATTTCTGGCGGGGATGAAGATGGATAAAGATTTAGTACTGACTTCTTGGAGAAGCCCTGGTGATCCGGGGAGTGGCAAATTCACATTTGAGCTGGGAAAAACGGGGGATAATCTCTATAGAATTTACAAAAAGCCGCACCAAGTTTACTGGGAAGGTGGAATACTATCCGATTTTAGTTCAGAAACAACTACCATTATGATTTATTACTTGTTAAGAAACTTCACACCAACGCCTTCAAAATATTATGGCAAAAACTTTCTAACGGTTCTTCCTACTTTGGATTTTCGGCGTAGAAGGCTGATGATGAACTATTCAGGTGAGATACAGTTTCTGAGTTGGGATACTTTCACAAGAGGATGGACAAAGCAATGGGAGCGGCCAGAGAACGAGTGCGAGAGATACAATTTTTGTGGCAACTGGAGCAGCTGCAACATTAAAAATGGGGCGTTCTGCAAATGTTTGCCGGGATTCATCGGGTCGCCTAAGAATCAGTACTCTGGAGAATTCTTCCAAGGTTGTTTCAGAAAATCAACATCATGCGGGGAAGACATGAAATTCATAGAGTTAAAGATGATGAAAGTGAGAAACCCAGACAAACAACTCAACGCAGAGAATGAAACGGACTGCAAATCTCAATGCCAGTGCCCCCAGTGCCAGGCTTATTCATATGATGCATCCAGAAGGAACAGAACGTTTGATCGTAGTTCCTTCACATGCTTGATCTGGACTGCGGATTTACCTACTCTTCAAGAAGAATACCCTGATGATGGTTTAGATTTCTATGTTCGGGTAAAGACGACAGACATAGCATCAACTGTAAGGACGTGTGAGCCTTGCGGTACAAACATAATTCCTTATCCGCTGAGCACTGAGCGAACCTGCGGAGATCCCAGTTACTTCAAGTTCAACTGCAACTTCTCAACAGGCCAGGTTAGCTTCATGATGGCAGGAGGCAGTTATCGAGTTACTAGGATTGATCCAGATGACAGAAAATTCTTCATCCAAGTCGAAGATTCGTCTTATTGTGATGATAGCAATCATGGCAGGCAGCTTGATCGGCCATTTAATGTGACTAACCGGTGCTTTGGTGCAGACGAAGTAGAAATTAGTTGGTCACCCCCGCCAGAACCAGCTTGTTCCAAGTCCGTAGACTGCAAGGATTGGTCTCATTCAACTTGTAATGCAACAGGCAAAGGAATTGGAAGATGTGTCTGTGATAAAAACTATCAATGGAATGGCTCAAATTTAACTTGTAGCCCAGAAAGGGGAAAAGTTCAAAGAATCAGTGAGCGCTTGAATGACAGTGAGAGATATCTTAAAGATTTGATAGACTCGGAGGAATTAGAGGAAAAAGGCAATGAAGGCATAGAGGTACCATATTTTGATTTTGAAACCATACTTGCGGTTACAGACAACTTTTCAGACGCAAACAAGCTTGGACGAGGGGGTTATGGCCCTGTTTACAAGACTGAGGCCAACACAGAGAGAGTAGTTGGAACTTATGGATATATGTCTCCGGAGTATGCTTTGGACGGGTTTTTCTCCATCAAATCAGACGTTTTCAGCTTTGGTGTAGTGGTGCTTGAGATTATCAGTGGAAAAAAAAACACGGGATTCTTTCAGTCCGGACAAGTTTCAAGCCTTCTGGGTTATGCGTGGAGACTGTGGGCAGAGAATAAGCTGCTGGATTTAATGGACCAGTCTCTGAGTGAGACTTGCAATGCAAATCAATTCATTAGGTGTGCAGAGGTCAGTCTCTTGTGCGTACAAGATGAACCAGGTGACCGACCCACCATGTCAAATGTTGTGATAATGCTTGAAAGCGAGAGTGCAAGCCTCCCAACTCCTAAACAGCCAACTTTTTTCATGAACAGACGCCTTTCCAGCACTGCTTCTTCTTCCAGTAAACCAGAAACAATTCTGCAAACTACCAGTTCCTATCAGGAAGAACCTGGAGAAAGAGCTATAGCCTATAAGGGTCTAAACTCTAAAAGCCAAAATGTTGACTCTCTGGTGGCTGATCCTAAAATAACTCAATCCTATGATATTACTTTTGAAGTGTATCATTTCACCCATTTTGGACAGGCGAATGAGTTATACAAAAATATCCGATCTAAATATGCGTCAATTATATGCACAACTACTAACAACTTCATAAGTGATGGGAGAGGAGATACTCTTATTTCAGCGGGAGAAGTATTTGAACTAGGATTCTTTACTCCAAATGGAAGCTCTAGTCGCAGAAGATATGTGGGAATATGGTACTATAGGTGTAATCCACCAGCAGTTGTGTGGGTTGCCAACCGAGACAATCCACTTTCTAATGCTGGGGGTACTTTTGCCATTGCAGAGGATGGTAATCTCAGGGTTCTGGATGGAAGTGGGAGATCTTACTGGGGTACAAATCTTGAAACATCATCTCCAGTGCATAGGACAGTGAAGCTAATGGACAGTGGAAATCTCGTCGTAAGCGATGAAGAACCAGGAAATCACTCAGTAAAGATTCTCTGA 3054 0.4263 MNLWQSSENPTDTFLPQFFVLVIMITKRRIRKRVFVVLLPLYAWLLCLSQPCLAGDTMKVGENLTDNLVSVGKYFELGFFSPPGSSNRYLGIWYHGLEPRSVVWVANRDQPVVDSTGVFQLSEDGNLKVLDANGRKYWSSGLQVSSFTNRTVKLMDSGNLMLRDDQSEMSLWQSFEHPTDTFLAGMKMDKDLVLTSWRSPGDPGSGKFTFELGKTGDNLYRIYKKPHQVYWEGGILSDFSSETTTIMIYYLLRNFTPTPSKYYGKNFLTVLPTLDFRRRRLMMNYSGEIQFLSWDTFTRGWTKQWERPENECERYNFCGNWSSCNIKNGAFCKCLPGFIGSPKNQYSGEFFQGCFRKSTSCGEDMKFIELKMMKVRNPDKQLNAENETDCKSQCQCPQCQAYSYDASRRNRTFDRSSFTCLIWTADLPTLQEEYPDDGLDFYVRVKTTDIASTVRTCEPCGTNIIPYPLSTERTCGDPSYFKFNCNFSTGQVSFMMAGGSYRVTRIDPDDRKFFIQVEDSSYCDDSNHGRQLDRPFNVTNRCFGADEVEISWSPPPEPACSKSVDCKDWSHSTCNATGKGIGRCVCDKNYQWNGSNLTCSPERGKVQRISERLNDSERYLKDLIDSEELEEKGNEGIEVPYFDFETILAVTDNFSDANKLGRGGYGPVYKTEANTERVVGTYGYMSPEYALDGFFSIKSDVFSFGVVVLEIISGKKNTGFFQSGQVSSLLGYAWRLWAENKLLDLMDQSLSETCNANQFIRCAEVSLLCVQDEPGDRPTMSNVVIMLESESASLPTPKQPTFFMNRRLSSTASSSSKPETILQTTSSYQEEPGERAIAYKGLNSKSQNVDSLVADPKITQSYDITFEVYHFTHFGQANELYKNIRSKYASIICTTTNNFISDGRGDTLISAGEVFELGFFTPNGSSSRRRYVGIWYYRCNPPAVVWVANRDNPLSNAGGTFAIAEDGNLRVLDGSGRSYWGTNLETSSPVHRTVKLMDSGNLVVSDEEPGNHSVKIL 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0681 1017 Pfam D-mannose binding lectin 102 192 IPR001480 -
Glsi04g0681 1017 Pfam D-mannose binding lectin 944 1010 IPR001480 -
Glsi04g0681 1017 ProSiteProfiles PAN/Apple domain profile. 361 446 IPR003609 -
Glsi04g0681 1017 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 667 792 - -
Glsi04g0681 1017 SMART ntp_6 362 445 IPR003609 -
Glsi04g0681 1017 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 893 1007 - -
Glsi04g0681 1017 FunFam Receptor-like serine/threonine-protein kinase SD1-8 50 175 - -
Glsi04g0681 1017 SMART blect_4 61 178 IPR001480 -
Glsi04g0681 1017 SMART blect_4 897 1013 IPR001480 -
Glsi04g0681 1017 ProSiteProfiles Bulb-type lectin domain profile. 893 1017 IPR001480 -
Glsi04g0681 1017 Gene3D Transferase(Phosphotransferase) domain 1 643 799 - -
Glsi04g0681 1017 FunFam Os04g0303100 protein 93 230 - -
Glsi04g0681 1017 CDD EGF_CA 310 340 - -
Glsi04g0681 1017 CDD B_lectin 68 178 IPR001480 -
Glsi04g0681 1017 Pfam Protein tyrosine and serine/threonine kinase 680 785 IPR001245 GO:0004672|GO:0006468
Glsi04g0681 1017 Pfam S-locus glycoprotein domain 240 338 IPR000858 GO:0048544
Glsi04g0681 1017 SUPERFAMILY alpha-D-mannose-specific plant lectins 930 1008 IPR036426 -
Glsi04g0681 1017 CDD B_lectin 897 1008 IPR001480 -
Glsi04g0681 1017 ProSiteProfiles Bulb-type lectin domain profile. 49 175 IPR001480 -
Glsi04g0681 1017 Gene3D - 895 1014 IPR036426 -
Glsi04g0681 1017 Gene3D - 52 177 IPR036426 -
Glsi04g0681 1017 SUPERFAMILY Protein kinase-like (PK-like) 675 827 IPR011009 -
Glsi04g0681 1017 SUPERFAMILY alpha-D-mannose-specific plant lectins 102 203 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0681 Glsi-ChrGlsi04 4798207 4804183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0681 670 821 Receptor kinase-like Gene Family AT4G23150 48.408 5.17e-44 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Glsi04g0681 PK_Tyr_Ser-Thr 8.9e-09 CL0016