Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0648 ATGGTGAGAACCTGCAGAACCCCTTGCTGCGACTCCACTGGACTGAAGAAAGGCAAATGGACACCAGAAGAAGACAAGAAGTTGGTTGATTATGTTACTAAGTATGGCCACTGGAATTGGCGACAACTCCCCAAGTTCGCAGGATTAGCAAGGTGTGGAAAGAGTTGTAGACTGAGGTGGCTGAACTATCTAAGGCCAGACGTCAAAAGAGGGAATTACACTCGAGAAGAAGAAGACACTATTATAAGACTCCACGAAGAGTTGGGTAATAGATGGTCTATGATTGCTGCTCATTTACCGGGAAGATCAGATAACGAAATAAGAAACCAATGGCACACCCACCTCAAGAAGCGTTTTCTCCACGACTCAAATGATAATAATAAATCCAGGCAAGACTTAGACACTGGTCCTTCAAAATATGCTTCAGCTGATTCCCAAATCTCCAATACCTGCCCAATGTCCTCTCAAGCATCCTCCGGCAAATCCTCCTGCATCACTACTTCCAGTCTAAATGAAAATTTGGTTGTGGAGGATGACTTGGCTTTTTTGTATGCAAATTTTTGGACTGAACCGTTTATGGTTTCGTACGTTCCTAGTGAAGCACCAGTGATACCCTTGGTGACTGAACCTGAATATTACAGTCCTGTATGCGATGTAAGTGACAAACATCTATATCGGAAAGATGACTTCGCTTTTCTGGATGCATTCCCAGAGCCTGAGCCTATGAGTAATAATTTTTTGACAGAACCACATATGGTTGACATTTCCTCCGATCCTAGTGAAACACTGGTTCCCATGATGAGTGAACCTGAAAATTTAAGTCATGTGTGCGATGCCACTAAGGAAAAATCTTTTCTGGATGCATTTACAGAGCCTATGAGTGCAAATTATTCGGCAGAACCCTACATCCCTAACGAAGCAGGGATTCCTCTGATGAGTGAACTTGAATGGTTTAGTACCGTGTGCAATGCCAATAACGAAAATTTGTTTCTGGAAGATGTATTCACAAAGGTTGGATGTATATGGGTTGTGGTTGTGGTTGTGGAGCATGATGATGTGCTGTACAAACCTCCGGAAGCTATCTATATAGCTTCTGTTTTTAGTCCAGAGATGAAGTTGGCAGCTGTGTAA 1131 0.4279 MVRTCRTPCCDSTGLKKGKWTPEEDKKLVDYVTKYGHWNWRQLPKFAGLARCGKSCRLRWLNYLRPDVKRGNYTREEEDTIIRLHEELGNRWSMIAAHLPGRSDNEIRNQWHTHLKKRFLHDSNDNNKSRQDLDTGPSKYASADSQISNTCPMSSQASSGKSSCITTSSLNENLVVEDDLAFLYANFWTEPFMVSYVPSEAPVIPLVTEPEYYSPVCDVSDKHLYRKDDFAFLDAFPEPEPMSNNFLTEPHMVDISSDPSETLVPMMSEPENLSHVCDATKEKSFLDAFTEPMSANYSAEPYIPNEAGIPLMSELEWFSTVCNANNENLFLEDVFTKVGCIWVVVVVVEHDDVLYKPPEAIYIASVFSPEMKLAAV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0648 376 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Glsi04g0648 376 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Glsi04g0648 376 Gene3D - 72 139 - -
Glsi04g0648 376 CDD SANT 72 115 IPR001005 -
Glsi04g0648 376 CDD SANT 19 64 IPR001005 -
Glsi04g0648 376 Gene3D - 16 69 - -
Glsi04g0648 376 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Glsi04g0648 376 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Glsi04g0648 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Glsi04g0648 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Glsi04g0648 376 MobiDBLite consensus disorder prediction 130 162 - -
Glsi04g0648 376 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Glsi04g0648 376 SMART sant 69 117 IPR001005 -
Glsi04g0648 376 SMART sant 16 66 IPR001005 -
Glsi04g0648 376 FunFam MYB-related transcription factor 16 69 - -
Glsi04g0648 376 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 5 169 - -
Glsi04g0648 376 MobiDBLite consensus disorder prediction 122 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0648 Glsi-ChrGlsi04 4446674 4450170 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0648 6 194 MYB Transcription Factor Family AT1G06180 52.910 1.66e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0648 Myb_DNA-binding 1.3e-14 CL0123