Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g0647 ATGGTGAGAACCAGAACCCCTTGCTGCGACCAAACTGGAGTAAAGAAAGGCGCATGGACACCAGAAGAAGACAGGAAGTTGATTGCTTATGTTACTAGGTACGGCCACTGGAATTGGCGACTGCTCCCCAAGTTTGCAGGATTAGCAAGGTCTGGAAAGAGTTGTAGACTAAGGTGGATGAATTATCTGAGGCCAGACGTCAAAAGAGGGAGTTACACTCGAGAAGAAGAAGACACTATCATCAGACTCCACGAAGAGTTGGGTAATAGATGGTCTATGATTGCTGCTCATTTACCAGGAAGAACAGATAACCAAATAAAAAACCACTGGCACACCAACCTCAAGAAGCGTTTTCTCCACAACTCAAAGGCTAATAATAAATCCAGGCAAGACTCAGACACTGGTCCTTCAAAATATGATTCAGCTAATTCCCGAATCTCCAATACCTGCCCAATGTCCTCTCAGGCATTCTCCAGCAAATTCTCCTCCATCACTACTTCCAGTCTTAATGAAAATTTGGTTGTGGAGGATCACTTGCCTTTTTTGGATGCAAGTTTTTGGACTGAACCGTTTATGGTTGACATTTCGTACGTTCCTAGTGAAGCACCAGTGATATCCTTGGTGACTGAACCTGAATATTACAGTCCTGTATGCGATATAAGTAACGATCATTTGTATCCGAAAGATGACTTCGCTTTTCTGGATGCATTCGCAGAGCCTGAGCCTATGAGTACAAATTTTTTGACTGACCCACATATGGTTGACATTTCCTCCGATCCTAGTGAAACTCTGGTTCCCATGATGAGTGAACCTGAATATTTTAGTCCTCTGTGCGATGCCACTAAGGAAAAATCTTTTCTGGATGCATTCACGGAGCCTGTGAGTGCAAATTGTTTGGCAGAACCCTACGCCCCTAACGAAGCAGTGGTTCCCTTGATGAGTGAATCTGAATGCTTTAGCTCCGTGTGGAATGCCAATAACGAAAATTTGTTTCTGGAAGAAGCATTCACAAACCCCATGGGTGCAAATTTTTCAACGGAACCATATATGGTTGACATTTCCAACGTCCCTAGTGAGTGTGATGCTAATAAGGAAAATTTGTTTGTGGAAGATGGCTGCTTCATCGGCCAATTCCCTAAGAATCAACAAGCATATGGCCTCTCCCTTTGCCGAGGAGATGTCTCAGCCTCCGACTGCAAAACTCGTGTCGCTGAAGCAAGCATCGAATTCCGCAAACGTTGTTCCTATAACGAAGGTGCCGTTATCTGGGATGACTCAGTGCACCAGAGACCTTGGTGTCTTGATGATGCAATTGGTGAACGTCCGAATTGTTGTGAGGGGAAAGAAGGAGGCAGAGTTGTGGGTGGAAACTGCAATATCCGATATGAGATTCACCCAGCTGTCAGAGATGAGAAGCTCCTTCAATTGATCAATTATTGCCCCCGCATAGATAATGCATTCCATCTACTATTGACTTGGATGGATATGGGTTGGAGTTGGGGTTGTGTGGAGCATGATTATATGCTGTACAAACCTACGGAAGCTAGCTATATAGCTTCTGTTTTTCGTGCTGAAATGAAGATGGCAGCTGTATAA 1596 0.443 MVRTRTPCCDQTGVKKGAWTPEEDRKLIAYVTRYGHWNWRLLPKFAGLARSGKSCRLRWMNYLRPDVKRGSYTREEEDTIIRLHEELGNRWSMIAAHLPGRTDNQIKNHWHTNLKKRFLHNSKANNKSRQDSDTGPSKYDSANSRISNTCPMSSQAFSSKFSSITTSSLNENLVVEDHLPFLDASFWTEPFMVDISYVPSEAPVISLVTEPEYYSPVCDISNDHLYPKDDFAFLDAFAEPEPMSTNFLTDPHMVDISSDPSETLVPMMSEPEYFSPLCDATKEKSFLDAFTEPVSANCLAEPYAPNEAVVPLMSESECFSSVWNANNENLFLEEAFTNPMGANFSTEPYMVDISNVPSECDANKENLFVEDGCFIGQFPKNQQAYGLSLCRGDVSASDCKTRVAEASIEFRKRCSYNEGAVIWDDSVHQRPWCLDDAIGERPNCCEGKEGGRVVGGNCNIRYEIHPAVRDEKLLQLINYCPRIDNAFHLLLTWMDMGWSWGCVEHDYMLYKPTEASYIASVFRAEMKMAAV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g0647 531 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Glsi04g0647 531 Gene3D - 71 141 - -
Glsi04g0647 531 FunFam MYB-related transcription factor 15 68 - -
Glsi04g0647 531 Pfam Salt stress response/antifungal 374 425 IPR002902 -
Glsi04g0647 531 MobiDBLite consensus disorder prediction 128 146 - -
Glsi04g0647 531 Gene3D - 9 69 - -
Glsi04g0647 531 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 63 IPR017930 -
Glsi04g0647 531 SMART sant 15 65 IPR001005 -
Glsi04g0647 531 SMART sant 68 116 IPR001005 -
Glsi04g0647 531 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Glsi04g0647 531 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Glsi04g0647 531 CDD SANT 71 114 IPR001005 -
Glsi04g0647 531 CDD SANT 18 63 IPR001005 -
Glsi04g0647 531 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 168 - -
Glsi04g0647 531 ProSiteProfiles Gnk2-homologous domain profile. 330 436 IPR002902 -
Glsi04g0647 531 Gene3D - 353 430 IPR038408 -
Glsi04g0647 531 Gene3D - 431 466 IPR038408 -
Glsi04g0647 531 MobiDBLite consensus disorder prediction 121 146 - -
Glsi04g0647 531 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Glsi04g0647 531 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Glsi04g0647 531 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g0647 Glsi-ChrGlsi04 4439560 4446330 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g0647 5 238 MYB Transcription Factor Family AT2G31180 46.610 8.59e-64 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi04g0647 Stress-antifung 3.8e-06 No_clan